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| | ==Crystal Structure of Aminoacylhistidine Dipeptidase from Vibrio alginolyticus== | | ==Crystal Structure of Aminoacylhistidine Dipeptidase from Vibrio alginolyticus== |
| - | <StructureSection load='3mru' size='340' side='right' caption='[[3mru]], [[Resolution|resolution]] 3.00Å' scene=''> | + | <StructureSection load='3mru' size='340' side='right'caption='[[3mru]], [[Resolution|resolution]] 3.00Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3mru]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"oceanomonas_alginolytica"_miyamoto_et_al._1961 "oceanomonas alginolytica" miyamoto et al. 1961]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MRU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MRU FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3mru]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Vibrio_alginolyticus Vibrio alginolyticus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MRU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MRU FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3Å</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrolase Hydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.4.13.18 and 3.4.13.20 3.4.13.18 and 3.4.13.20] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mru FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mru OCA], [http://pdbe.org/3mru PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mru RCSB], [http://www.ebi.ac.uk/pdbsum/3mru PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mru ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mru FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mru OCA], [https://pdbe.org/3mru PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mru RCSB], [https://www.ebi.ac.uk/pdbsum/3mru PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mru ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q2LD50_VIBAL Q2LD50_VIBAL] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
| | Check<jmol> | | Check<jmol> |
| | <jmolCheckbox> | | <jmolCheckbox> |
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mr/3mru_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mr/3mru_consurf.spt"</scriptWhenChecked> |
| | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> |
| | <text>to colour the structure by Evolutionary Conservation</text> | | <text>to colour the structure by Evolutionary Conservation</text> |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Oceanomonas alginolytica miyamoto et al. 1961]] | + | [[Category: Large Structures]] |
| - | [[Category: Hydrolase]] | + | [[Category: Vibrio alginolyticus]] |
| - | [[Category: Chang, C Y]] | + | [[Category: Chang C-Y]] |
| - | [[Category: Chen, C J]] | + | [[Category: Chen C-J]] |
| - | [[Category: Hsieh, Y C]] | + | [[Category: Hsieh Y-C]] |
| - | [[Category: Wu, T K]] | + | [[Category: Wu T-K]] |
| - | [[Category: Homodimer]]
| + | |
| - | [[Category: Metalloprotease]]
| + | |
| Structural highlights
Function
Q2LD50_VIBAL
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Aminoacylhistidine dipeptidases (PepD, EC 3.4.13.3) belong to the family of M20 metallopeptidases from the metallopeptidase H (MH) clan that catalyzes a broad range of dipeptide and tripeptide substrates, including L-carnosine and L-homocarnosine. Homocarnosine has been suggested as a precursor for the neurotransmitter gamma-amino butyric acid (GABA) and may mediate the antiseizure effects of GABAergic therapies. Here, we report the crystal structure of PepD from Vibrio alginolyticus and the results of mutational analysis of substrate-binding residues in the C-terminal as well as substrate specificity of the PepD catalytic domain-alone truncated protein PepDCAT. The structure of PepD was found to exist as a homodimer, in which each monomer comprises a catalytic domain containing two zinc ions at the active-site center for its hydrolytic function and a lid domain utilizing hydrogen bonds between helices to form the dimer interface. Although the PepD is structurally similar to PepV, which exists as a monomer, putative substrate-binding residues reside in different topological regions of the polypeptide chain. In addition, the lid domain of the PepD contains an extra domain not observed in related M20 family metallopeptidases with a dimeric structure. Mutational assays confirmed both the putative di-zinc allocations and the architecture of substrate recognition. In addition, the catalytic domain-alone truncated PepDCAT exhibited superior substrate specificity to L-homocarnosine than that of the wild-type PepD, indicating potential value in applications of PepDCAT for GABAergic therapies or neuroprotection.
Crystal structure and mutational analysis of aminoacylhistidine dipeptidase from vibrio alginolyticus reveal a new architecture of M20 metallopeptidases.,Chang CY, Hsieh YC, Wang TY, Chen YC, Wang YK, Chiang TW, Chen YJ, Chang CH, Chen CJ, Wu TK J Biol Chem. 2010 Sep 6. PMID:20819954[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Chang CY, Hsieh YC, Wang TY, Chen YC, Wang YK, Chiang TW, Chen YJ, Chang CH, Chen CJ, Wu TK. Crystal structure and mutational analysis of aminoacylhistidine dipeptidase from vibrio alginolyticus reveal a new architecture of M20 metallopeptidases. J Biol Chem. 2010 Sep 6. PMID:20819954 doi:10.1074/jbc.M110.139683
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