|
|
(3 intermediate revisions not shown.) |
Line 1: |
Line 1: |
| | | |
- | ==ANAEROBIC COBALT CHELATASE (CBIX) FROM ARCHAEOGLOBUS FULGIDUS== | + | ==ANAEROBIC COBALT CHELATASE (CbiX) FROM ARCHAEOGLOBUS FULGIDUS== |
- | <StructureSection load='2xws' size='340' side='right' caption='[[2xws]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='2xws' size='340' side='right'caption='[[2xws]], [[Resolution|resolution]] 1.60Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2xws]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arcfl Arcfl]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XWS OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XWS FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2xws]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Archaeoglobus_fulgidus Archaeoglobus fulgidus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XWS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XWS FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2dj5|2dj5]], [[1tjn|1tjn]], [[2xwq|2xwq]], [[2xwp|2xwp]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sirohydrochlorin_cobaltochelatase Sirohydrochlorin cobaltochelatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.99.1.3 4.99.1.3] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xws FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xws OCA], [https://pdbe.org/2xws PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xws RCSB], [https://www.ebi.ac.uk/pdbsum/2xws PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xws ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xws FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xws OCA], [http://pdbe.org/2xws PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xws RCSB], [http://www.ebi.ac.uk/pdbsum/2xws PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xws ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/CBIX_ARCFU CBIX_ARCFU]] Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis.<ref>PMID:16835730</ref> | + | [https://www.uniprot.org/uniprot/CBIX_ARCFU CBIX_ARCFU] Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis.<ref>PMID:16835730</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
Line 23: |
Line 22: |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arcfl]] | + | [[Category: Archaeoglobus fulgidus]] |
- | [[Category: Sirohydrochlorin cobaltochelatase]] | + | [[Category: Large Structures]] |
- | [[Category: Brindley, A A]] | + | [[Category: Brindley AA]] |
- | [[Category: Carrondo, M A]] | + | [[Category: Carrondo MA]] |
- | [[Category: Deery, E]] | + | [[Category: Deery E]] |
- | [[Category: Ladakis, D]] | + | [[Category: Ladakis D]] |
- | [[Category: Lobo, S A.L]] | + | [[Category: Lobo SAL]] |
- | [[Category: Matias, P M]] | + | [[Category: Matias PM]] |
- | [[Category: Pickersgill, R W]] | + | [[Category: Pickersgill RW]] |
- | [[Category: Romao, C V]] | + | [[Category: Romao CV]] |
- | [[Category: Saraiva, L M]] | + | [[Category: Saraiva LM]] |
- | [[Category: Warren, M J]] | + | [[Category: Warren MJ]] |
- | [[Category: Beta-alpha-beta]]
| + | |
- | [[Category: Cobalamin biosynthesis]]
| + | |
- | [[Category: Lyase]]
| + | |
- | [[Category: Metal-binding]]
| + | |
- | [[Category: Parallel beta sheet]]
| + | |
| Structural highlights
Function
CBIX_ARCFU Catalyzes the insertion of Co(2+) into sirohydrochlorin as part of the anaerobic pathway to cobalamin biosynthesis.[1]
Publication Abstract from PubMed
The class II chelatases associated with heme, siroheme, and cobalamin biosynthesis are structurally related enzymes that insert a specific metal ion (Fe(2+) or Co(2+)) into the center of a modified tetrapyrrole (protoporphyrin or sirohydrochlorin). The structures of two related class II enzymes, CbiX(S) from Archaeoglobus fulgidus and CbiK from Salmonella enterica, that are responsible for the insertion of cobalt along the cobalamin biosynthesis pathway are presented in complex with their metallated product. A further structure of a CbiK from Desulfovibrio vulgaris Hildenborough reveals how cobalt is bound at the active site. The crystal structures show that the binding of sirohydrochlorin is distinctly different to porphyrin binding in the protoporphyrin ferrochelatases and provide a molecular overview of the mechanism of chelation. The structures also give insights into the evolution of chelatase form and function. Finally, the structure of a periplasmic form of Desulfovibrio vulgaris Hildenborough CbiK reveals a novel tetrameric arrangement of its subunits that are stabilized by the presence of a heme b cofactor. Whereas retaining colbaltochelatase activity, this protein has acquired a central cavity with the potential to chaperone or transport metals across the periplasmic space, thereby evolving a new use for an ancient protein subunit.
Evolution in a family of chelatases facilitated by the introduction of active site asymmetry and protein oligomerization.,Romao CV, Ladakis D, Lobo SA, Carrondo MA, Brindley AA, Deery E, Matias PM, Pickersgill RW, Saraiva LM, Warren MJ Proc Natl Acad Sci U S A. 2010 Dec 20. PMID:21173279[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Yin J, Xu LX, Cherney MM, Raux-Deery E, Bindley AA, Savchenko A, Walker JR, Cuff ME, Warren MJ, James MN. Crystal structure of the vitamin B12 biosynthetic cobaltochelatase, CbiXS, from Archaeoglobus fulgidus. J Struct Funct Genomics. 2006 Mar;7(1):37-50. Epub 2006 Jul 12. PMID:16835730 doi:10.1007/s10969-006-9008-x
- ↑ Romao CV, Ladakis D, Lobo SA, Carrondo MA, Brindley AA, Deery E, Matias PM, Pickersgill RW, Saraiva LM, Warren MJ. Evolution in a family of chelatases facilitated by the introduction of active site asymmetry and protein oligomerization. Proc Natl Acad Sci U S A. 2010 Dec 20. PMID:21173279 doi:10.1073/pnas.1014298108
|