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| | ==The crystal structure of GilR, an oxidoreductase that catalyzes the terminal step of gilvocarcin biosynthesis== | | ==The crystal structure of GilR, an oxidoreductase that catalyzes the terminal step of gilvocarcin biosynthesis== |
| - | <StructureSection load='3pop' size='340' side='right' caption='[[3pop]], [[Resolution|resolution]] 1.65Å' scene=''> | + | <StructureSection load='3pop' size='340' side='right'caption='[[3pop]], [[Resolution|resolution]] 1.65Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3pop]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/"actinomyces_griseoflavus"_krainsky_1914 "actinomyces griseoflavus" krainsky 1914]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3POP OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3POP FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3pop]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_griseoflavus Streptomyces griseoflavus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3POP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3POP FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.651Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2ipi|2ipi]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gilR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=35619 "Actinomyces griseoflavus" Krainsky 1914])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pop OCA], [https://pdbe.org/3pop PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pop RCSB], [https://www.ebi.ac.uk/pdbsum/3pop PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pop ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pop FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pop OCA], [http://pdbe.org/3pop PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3pop RCSB], [http://www.ebi.ac.uk/pdbsum/3pop PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3pop ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q7X2G7_9ACTN Q7X2G7_9ACTN] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Actinomyces griseoflavus krainsky 1914]] | + | [[Category: Large Structures]] |
| - | [[Category: Bosserman, M A]] | + | [[Category: Streptomyces griseoflavus]] |
| - | [[Category: Buchanan, S K]] | + | [[Category: Bosserman MA]] |
| - | [[Category: Kharel, M K]] | + | [[Category: Buchanan SK]] |
| - | [[Category: Noinaj, N]] | + | [[Category: Kharel MK]] |
| - | [[Category: Rohr, J]] | + | [[Category: Noinaj N]] |
| - | [[Category: Schickli, M A]] | + | [[Category: Rohr J]] |
| - | [[Category: Covalently bound fad]]
| + | [[Category: Schickli MA]] |
| - | [[Category: Fad binding protein]]
| + | |
| - | [[Category: Gilvocarcin]]
| + | |
| - | [[Category: Gilvocarcin biosynthesis]]
| + | |
| - | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Function
Q7X2G7_9ACTN
Publication Abstract from PubMed
GilR is a recently identified oxidoreductase that catalyzes the terminal step of gilvocarcin V biosynthesis and is a unique enzyme that establishes the lactone core of the polyketide-derived gilvocarcin chromophore. Gilvocarcin-type compounds form a small distinct family of anticancer agents that are involved in both photo-activated DNA-alkylation and histone H3 cross-linking. High resolution crystal structures of apoGilR and GilR in complex with its substrate pregilvocarcin V reveals that GilR belongs to the small group of a relatively new type of the vanillyl-alcohol oxidase flavoprotein family characterized by bicovalently tethered cofactors. GilR was found as a dimer, with the bicovalently attached FAD cofactor mediated through His-65 and Cys-125. Subsequent mutagenesis and functional assays indicate that Tyr-445 may be involved in reaction catalysis and in mediating the covalent attachment of FAD, whereas Tyr-448 serves as an essential residue initiating the catalysis by swinging away from the active site to accommodate binding of the 6R-configured substrate and consequently abstracting the proton of the hydroxyl residue of the substrate hemiacetal 6-OH group. These studies lay the groundwork for future enzyme engineering to broaden the substrate specificity of this bottleneck enzyme of the gilvocarcin biosynthetic pathway for the development of novel anti-cancer therapeutics.
The Crystal Structure and Mechanism of an Unusual Oxidoreductase, GilR, Involved in Gilvocarcin V Biosynthesis.,Noinaj N, Bosserman MA, Schickli MA, Piszczek G, Kharel MK, Pahari P, Buchanan SK, Rohr J J Biol Chem. 2011 Jul 1;286(26):23533-43. Epub 2011 May 10. PMID:21561854[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Noinaj N, Bosserman MA, Schickli MA, Piszczek G, Kharel MK, Pahari P, Buchanan SK, Rohr J. The Crystal Structure and Mechanism of an Unusual Oxidoreductase, GilR, Involved in Gilvocarcin V Biosynthesis. J Biol Chem. 2011 Jul 1;286(26):23533-43. Epub 2011 May 10. PMID:21561854 doi:10.1074/jbc.M111.247833
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