This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3ovq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (16:58, 1 November 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==Crytal Structure of hRPE and D-Ribulose-5-Phospate Complex==
+
==Crystal Structure of hRPE and D-Ribulose-5-Phospate Complex==
-
<StructureSection load='3ovq' size='340' side='right' caption='[[3ovq]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='3ovq' size='340' side='right'caption='[[3ovq]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ovq]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OVQ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OVQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ovq]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OVQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OVQ FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=5RP:RIBULOSE-5-PHOSPHATE'>5RP</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=XPE:3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL'>XPE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.999&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3ovp|3ovp]], [[3ovr|3ovr]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=5RP:RIBULOSE-5-PHOSPHATE'>5RP</scene>, <scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=XPE:3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL'>XPE</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RPE, HUSSY-17 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ovq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ovq OCA], [https://pdbe.org/3ovq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ovq RCSB], [https://www.ebi.ac.uk/pdbsum/3ovq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ovq ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ribulose-phosphate_3-epimerase Ribulose-phosphate 3-epimerase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=5.1.3.1 5.1.3.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ovq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ovq OCA], [http://pdbe.org/3ovq PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ovq RCSB], [http://www.ebi.ac.uk/pdbsum/3ovq PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ovq ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/RPE_HUMAN RPE_HUMAN]] Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.<ref>PMID:20923965</ref>
+
[https://www.uniprot.org/uniprot/RPE_HUMAN RPE_HUMAN] Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate.<ref>PMID:20923965</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
-
[[Category: Ribulose-phosphate 3-epimerase]]
+
[[Category: Large Structures]]
-
[[Category: Joachimiak, A]]
+
[[Category: Joachimiak A]]
-
[[Category: Liang, W G]]
+
[[Category: Liang WG]]
-
[[Category: Liu, Z J]]
+
[[Category: Liu ZJ]]
-
[[Category: Ouyang, S Y]]
+
[[Category: Ouyang SY]]
-
[[Category: Shaw, N]]
+
[[Category: Shaw N]]
-
[[Category: Zhang, R G]]
+
[[Category: Zhang RG]]
-
[[Category: D-ribulose-5-phosphate]]
+
-
[[Category: Isomerase]]
+

Current revision

Crystal Structure of hRPE and D-Ribulose-5-Phospate Complex

PDB ID 3ovq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools