This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3vml

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:27, 8 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Chimera 3-isopropylmalate dehydrogenase between Shewanella oneidensis MR-1 (O) and Shewanella benthica DB21 MT-2 (M) from N-terminal: 20% O middle 70% M residual 10% O==
==Chimera 3-isopropylmalate dehydrogenase between Shewanella oneidensis MR-1 (O) and Shewanella benthica DB21 MT-2 (M) from N-terminal: 20% O middle 70% M residual 10% O==
-
<StructureSection load='3vml' size='340' side='right' caption='[[3vml]], [[Resolution|resolution]] 1.56&Aring;' scene=''>
+
<StructureSection load='3vml' size='340' side='right'caption='[[3vml]], [[Resolution|resolution]] 1.56&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3vml]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_43992 Atcc 43992]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VML OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VML FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3vml]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Shewanella_benthica Shewanella benthica] and [https://en.wikipedia.org/wiki/Shewanella_oneidensis_MR-1 Shewanella oneidensis MR-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VML OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VML FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IPM:3-ISOPROPYLMALIC+ACID'>IPM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.56&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vmj|3vmj]], [[3vmk|3vmk]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=IPM:3-ISOPROPYLMALIC+ACID'>IPM</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">leuB, SO_4235 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=43661 ATCC 43992])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vml OCA], [https://pdbe.org/3vml PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vml RCSB], [https://www.ebi.ac.uk/pdbsum/3vml PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vml ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/3-isopropylmalate_dehydrogenase 3-isopropylmalate dehydrogenase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.1.85 1.1.1.85] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vml FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vml OCA], [http://pdbe.org/3vml PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vml RCSB], [http://www.ebi.ac.uk/pdbsum/3vml PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vml ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/LEU3_SHEON LEU3_SHEON]] Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.
+
[https://www.uniprot.org/uniprot/LEU3_SHEON LEU3_SHEON] Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate.[https://www.uniprot.org/uniprot/D2YZL2_9GAMM D2YZL2_9GAMM] Catalyzes the oxidation of 3-carboxy-2-hydroxy-4-methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2-oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate (By similarity).[RuleBase:RU004445][HAMAP-Rule:MF_01033][SAAS:SAAS001804_004_020645]
==See Also==
==See Also==
Line 17: Line 15:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 3-isopropylmalate dehydrogenase]]
+
[[Category: Large Structures]]
-
[[Category: Atcc 43992]]
+
[[Category: Shewanella benthica]]
-
[[Category: Nagae, T]]
+
[[Category: Shewanella oneidensis MR-1]]
-
[[Category: Watanabe, N]]
+
[[Category: Nagae T]]
-
[[Category: Decarboxylating dehydrogenase]]
+
[[Category: Watanabe N]]
-
[[Category: Oxidoreductase]]
+

Current revision

Chimera 3-isopropylmalate dehydrogenase between Shewanella oneidensis MR-1 (O) and Shewanella benthica DB21 MT-2 (M) from N-terminal: 20% O middle 70% M residual 10% O

PDB ID 3vml

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3vml"
Personal tools