3ipk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (07:55, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of A3VP1 of AgI/II of Streptococcus mutans==
==Crystal Structure of A3VP1 of AgI/II of Streptococcus mutans==
-
<StructureSection load='3ipk' size='340' side='right' caption='[[3ipk]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
+
<StructureSection load='3ipk' size='340' side='right'caption='[[3ipk]], [[Resolution|resolution]] 2.04&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ipk]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_25175 Atcc 25175]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IPK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3IPK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ipk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_mutans Streptococcus mutans]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IPK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IPK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PMS:PHENYLMETHANESULFONIC+ACID'>PMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.04&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1jmm|1jmm]], [[3iox|3iox]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PMS:PHENYLMETHANESULFONIC+ACID'>PMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pa ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1309 ATCC 25175])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ipk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ipk OCA], [https://pdbe.org/3ipk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ipk RCSB], [https://www.ebi.ac.uk/pdbsum/3ipk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ipk ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ipk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ipk OCA], [http://pdbe.org/3ipk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ipk RCSB], [http://www.ebi.ac.uk/pdbsum/3ipk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ipk ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/C9E3B4_STRMG C9E3B4_STRMG]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ip/3ipk_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ip/3ipk_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 25175]]
+
[[Category: Large Structures]]
-
[[Category: Brady, L J]]
+
[[Category: Streptococcus mutans]]
-
[[Category: Crowley, P]]
+
[[Category: Brady LJ]]
-
[[Category: Deivanayagam, C C]]
+
[[Category: Crowley P]]
-
[[Category: Larson, M R]]
+
[[Category: Deivanayagam CC]]
-
[[Category: Michalek, S M]]
+
[[Category: Larson MR]]
-
[[Category: Patel, M]]
+
[[Category: Michalek SM]]
-
[[Category: Rajashankar, K R]]
+
[[Category: Patel M]]
-
[[Category: Robinette, R]]
+
[[Category: Rajashankar KR]]
-
[[Category: Alpha helix]]
+
[[Category: Robinette R]]
-
[[Category: Cell adhesion]]
+
-
[[Category: Cell wall]]
+
-
[[Category: Peptidoglycan-anchor]]
+
-
[[Category: Ppii helix]]
+
-
[[Category: Supersandwich fold]]
+
-
[[Category: Surface adhesin]]
+

Current revision

Crystal Structure of A3VP1 of AgI/II of Streptococcus mutans

PDB ID 3ipk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools