3mbb

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:10, 6 November 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of StSPL - apo form, after treatment with semicarbazide==
==Crystal structure of StSPL - apo form, after treatment with semicarbazide==
-
<StructureSection load='3mbb' size='340' side='right' caption='[[3mbb]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
+
<StructureSection load='3mbb' size='340' side='right'caption='[[3mbb]], [[Resolution|resolution]] 2.05&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3mbb]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Iam_14863 Iam 14863]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MBB OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3MBB FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3mbb]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Symbiobacterium_thermophilum Symbiobacterium thermophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MBB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MBB FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.051&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TY2:3-AMINO-L-TYROSINE'>TY2</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=TY2:3-AMINO-L-TYROSINE'>TY2</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3mad|3mad]], [[3mau|3mau]], [[3maf|3maf]], [[3mc6|3mc6]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mbb OCA], [https://pdbe.org/3mbb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mbb RCSB], [https://www.ebi.ac.uk/pdbsum/3mbb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mbb ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">STH1274 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2734 IAM 14863])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Sphinganine-1-phosphate_aldolase Sphinganine-1-phosphate aldolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.2.27 4.1.2.27] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3mbb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mbb OCA], [http://pdbe.org/3mbb PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3mbb RCSB], [http://www.ebi.ac.uk/pdbsum/3mbb PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3mbb ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q67PY4_SYMTH Q67PY4_SYMTH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mb/3mbb_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mb/3mbb_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 34: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Iam 14863]]
+
[[Category: Large Structures]]
-
[[Category: Sphinganine-1-phosphate aldolase]]
+
[[Category: Symbiobacterium thermophilum]]
-
[[Category: Bourquin, F]]
+
[[Category: Bourquin F]]
-
[[Category: Capitani, G]]
+
[[Category: Capitani G]]
-
[[Category: Grutter, M G]]
+
[[Category: Grutter MG]]
-
[[Category: Carboxy-lyase activity]]
+
-
[[Category: Lyase]]
+
-
[[Category: Pyridoxal phosphate]]
+

Current revision

Crystal structure of StSPL - apo form, after treatment with semicarbazide

PDB ID 3mbb

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3mbb"
Personal tools