This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3pac

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (13:30, 1 March 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of PduT a trimeric bacterial microcompartment protein with 4Fe-4S cluster binding site==
==Crystal structure of PduT a trimeric bacterial microcompartment protein with 4Fe-4S cluster binding site==
-
<StructureSection load='3pac' size='340' side='right' caption='[[3pac]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
+
<StructureSection load='3pac' size='340' side='right'caption='[[3pac]], [[Resolution|resolution]] 1.86&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3pac]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacterium_freundii"_braak_1928 "bacterium freundii" braak 1928]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PAC OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3PAC FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3pac]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Citrobacter_freundii Citrobacter freundii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3PAC OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3PAC FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pduT ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=546 "Bacterium freundii" Braak 1928])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.86&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3pac FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pac OCA], [http://pdbe.org/3pac PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3pac RCSB], [http://www.ebi.ac.uk/pdbsum/3pac PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3pac ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3pac FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3pac OCA], [https://pdbe.org/3pac PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3pac RCSB], [https://www.ebi.ac.uk/pdbsum/3pac PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3pac ProSAT]</span></td></tr>
</table>
</table>
-
<div style="background-color:#fffaf0;">
+
== Function ==
-
== Publication Abstract from PubMed ==
+
[https://www.uniprot.org/uniprot/B1VB78_CITFR B1VB78_CITFR]
-
Propanediol metabolism in Citrobacter freundii occurs within a metabolosome, a subcellular proteinaceous bacterial microcompartment. The propanediol-utilization (Pdu) microcompartment shell is constructed from thousands of hexagonal-shaped protein complexes made from seven different types of protein subunit. Here, the structure of the bacterial microcompartment protein PduT, which has a tandem structural repeat within the subunit and forms trimers with pseudo-hexagonal symmetry, is reported. This trimeric assembly forms a flat approximately hexagonally shaped disc with a central pore that is suitable for a 4Fe-4S cluster. The essentially cubic shaped 4Fe-4S cluster conforms to the threefold symmetry of the trimer with one free iron, the role of which could be to supply electrons to an associated microcompartment enzyme, PduS.
+
-
 
+
-
Structure of PduT, a trimeric bacterial microcompartment protein with a 4Fe-4S cluster-binding site.,Pang A, Warren MJ, Pickersgill RW Acta Crystallogr D Biol Crystallogr. 2011 Feb;67(Pt 2):91-6. Epub 2011 Jan, 8. PMID:21245529<ref>PMID:21245529</ref>
+
-
 
+
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 3pac" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacterium freundii braak 1928]]
+
[[Category: Citrobacter freundii]]
-
[[Category: Pang, A H]]
+
[[Category: Large Structures]]
-
[[Category: Pickersgill, R W]]
+
[[Category: Pang AH]]
-
[[Category: Warren, M J]]
+
[[Category: Pickersgill RW]]
-
[[Category: Bmc domain]]
+
[[Category: Warren MJ]]
-
[[Category: Electron transport]]
+
-
[[Category: Shell protein]]
+

Current revision

Crystal structure of PduT a trimeric bacterial microcompartment protein with 4Fe-4S cluster binding site

PDB ID 3pac

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3pac"
Personal tools