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| | ==I-BAR OF PinkBAR== | | ==I-BAR OF PinkBAR== |
| - | <StructureSection load='3ok8' size='340' side='right' caption='[[3ok8]], [[Resolution|resolution]] 2.25Å' scene=''> | + | <StructureSection load='3ok8' size='340' side='right'caption='[[3ok8]], [[Resolution|resolution]] 2.25Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3ok8]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Lk3_transgenic_mice Lk3 transgenic mice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OK8 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OK8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3ok8]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OK8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OK8 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.25Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Baiap2l2, PinkBAR ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=10090 LK3 transgenic mice])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ok8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ok8 OCA], [http://pdbe.org/3ok8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ok8 RCSB], [http://www.ebi.ac.uk/pdbsum/3ok8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ok8 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ok8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ok8 OCA], [https://pdbe.org/3ok8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ok8 RCSB], [https://www.ebi.ac.uk/pdbsum/3ok8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ok8 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/BI2L2_MOUSE BI2L2_MOUSE]] Phosphoinositides-binding protein that induces the formation of planar or gently curved membrane structures. Binds to phosphoinositides, including to phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) headgroups. There seems to be no clear preference for a specific phosphoinositide. | + | [https://www.uniprot.org/uniprot/BI2L2_MOUSE BI2L2_MOUSE] Phosphoinositides-binding protein that induces the formation of planar or gently curved membrane structures. Binds to phosphoinositides, including to phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)P2) headgroups. There seems to be no clear preference for a specific phosphoinositide. |
| - | <div style="background-color:#fffaf0;">
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| - | == Publication Abstract from PubMed ==
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| - | Bin/amphipysin/Rvs (BAR)-domain proteins sculpt cellular membranes and have key roles in processes such as endocytosis, cell motility and morphogenesis. BAR domains are divided into three subfamilies: BAR- and F-BAR-domain proteins generate positive membrane curvature and stabilize cellular invaginations, whereas I-BAR-domain proteins induce negative curvature and stabilize protrusions. We show that a previously uncharacterized member of the I-BAR subfamily, Pinkbar, is specifically expressed in intestinal epithelial cells, where it localizes to Rab13-positive vesicles and to the plasma membrane at intercellular junctions. Notably, the BAR domain of Pinkbar does not induce membrane tubulation but promotes the formation of planar membrane sheets. Structural and mutagenesis analyses reveal that the BAR domain of Pinkbar has a relatively flat lipid-binding interface and that it assembles into sheet-like oligomers in crystals and in solution, which may explain its unique membrane-deforming activity.
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| - | Pinkbar is an epithelial-specific BAR domain protein that generates planar membrane structures.,Pykalainen A, Boczkowska M, Zhao H, Saarikangas J, Rebowski G, Jansen M, Hakanen J, Koskela EV, Peranen J, Vihinen H, Jokitalo E, Salminen M, Ikonen E, Dominguez R, Lappalainen P Nat Struct Mol Biol. 2011 Jul 10. doi: 10.1038/nsmb.2079. PMID:21743456<ref>PMID:21743456</ref>
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
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| - | </div>
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| - | <div class="pdbe-citations 3ok8" style="background-color:#fffaf0;"></div>
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| - | == References ==
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| - | <references/>
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Lk3 transgenic mice]] | + | [[Category: Large Structures]] |
| - | [[Category: Boczkowska, M]] | + | [[Category: Mus musculus]] |
| - | [[Category: Dominguez, R]] | + | [[Category: Boczkowska M]] |
| - | [[Category: Lappalainen, P]] | + | [[Category: Dominguez R]] |
| - | [[Category: Rebowski, G]] | + | [[Category: Lappalainen P]] |
| - | [[Category: Saarikangas, J]] | + | [[Category: Rebowski G]] |
| - | [[Category: I-bar]]
| + | [[Category: Saarikangas J]] |
| - | [[Category: Protein binding]]
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