1m1f

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[[Image:1m1f.jpg|left|200px]]
 
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{{Structure
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==Kid toxin protein from E.coli plasmid R1==
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|PDB= 1m1f |SIZE=350|CAPTION= <scene name='initialview01'>1m1f</scene>, resolution 1.4&Aring;
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<StructureSection load='1m1f' size='340' side='right'caption='[[1m1f]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>
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<table><tr><td colspan='2'>[[1m1f]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M1F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M1F FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m1f OCA], [https://pdbe.org/1m1f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m1f RCSB], [https://www.ebi.ac.uk/pdbsum/1m1f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m1f ProSAT]</span></td></tr>
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|RELATEDENTRY=[[4vub|4VUB]]
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1m1f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m1f OCA], [http://www.ebi.ac.uk/pdbsum/1m1f PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1m1f RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/PEMK_ECOLX PEMK_ECOLX] Toxic component of a type II toxin-antitoxin (TA) module. Probably functions as an endoribonuclease. Responsible for the stable maintenance of the plasmid during cell division by postsegregational killing of plasmid-less daughter cells. Neutralized by coexpression with cognate antitoxin PemI. Both PemI and PemK proteins bind to the promoter region of the pem operon to autoregulate their synthesis.<ref>PMID:2832364</ref> <ref>PMID:8455570</ref>
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== Evolutionary Conservation ==
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'''Kid toxin protein from E.coli plasmid R1'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==Overview==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m1/1m1f_consurf.spt"</scriptWhenChecked>
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We have determined the structure of Kid toxin protein from E. coli plasmid R1 involved in stable plasmid inheritance by postsegregational killing of plasmid-less daughter cells. Kid forms a two-component system with its antagonist, Kis antitoxin. Our 1.4 A crystal structure of Kid reveals a 2-fold symmetric dimer that closely resembles the DNA gyrase-inhibitory toxin protein CcdB from E. coli F plasmid despite the lack of any notable sequence similarity. Analysis of nontoxic mutants of Kid suggests a target interaction interface associated with toxicity that is in marked contrast to that proposed for CcdB. A possible region for interaction of Kid with the antitoxin is proposed that overlaps with the target binding site and may explain the mode of antitoxin action.
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1M1F is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M1F OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m1f ConSurf].
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<div style="clear:both"></div>
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==Reference==
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== References ==
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Structural and functional analysis of the kid toxin protein from E. coli plasmid R1., Hargreaves D, Santos-Sierra S, Giraldo R, Sabariegos-Jareno R, de la Cueva-Mendez G, Boelens R, Diaz-Orejas R, Rafferty JB, Structure. 2002 Oct;10(10):1425-33. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12377128 12377128]
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<references/>
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__TOC__
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</StructureSection>
[[Category: Escherichia coli]]
[[Category: Escherichia coli]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Boelens, R.]]
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[[Category: Boelens R]]
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[[Category: Cueva-Mendez, G de la.]]
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[[Category: Diaz-Orejas R]]
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[[Category: Diaz-Orejas, R.]]
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[[Category: Giraldo R]]
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[[Category: Giraldo, R.]]
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[[Category: Hargreaves D]]
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[[Category: Hargreaves, D.]]
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[[Category: Rafferty JB]]
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[[Category: Rafferty, J B.]]
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[[Category: Sabariegos-Jareno R]]
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[[Category: Sabariegos-Jareno, R.]]
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[[Category: Santos-Sierra S]]
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[[Category: Santos-Sierra, S.]]
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[[Category: De la Cueva-Mendez G]]
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[[Category: ccdb]]
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[[Category: dna replication]]
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[[Category: mutational analysis]]
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[[Category: plasmid maintenance]]
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[[Category: post segregational killing]]
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[[Category: toxin-antitoxin]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:10:02 2008''
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Current revision

Kid toxin protein from E.coli plasmid R1

PDB ID 1m1f

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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