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- | ==STRUCTURE OF DESULFORUBIDIN FROM DESULFOMICROBIUM NORVEGICUM== | + | ==Structure of desulforubidin from Desulfomicrobium norvegicum== |
- | <StructureSection load='2xsj' size='340' side='right' caption='[[2xsj]], [[Resolution|resolution]] 2.50Å' scene=''> | + | <StructureSection load='2xsj' size='340' side='right'caption='[[2xsj]], [[Resolution|resolution]] 2.50Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[2xsj]] is a 6 chain structure with sequence from [http://en.wikipedia.org/wiki/Desulfomicrobium_norvegicum Desulfomicrobium norvegicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XSJ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XSJ FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2xsj]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Desulfomicrobium_norvegicum Desulfomicrobium norvegicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XSJ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XSJ FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=SRM:SIROHEME'>SRM</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Hydrogensulfite_reductase Hydrogensulfite reductase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.8.99.3 1.8.99.3] </span></td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SF4:IRON/SULFUR+CLUSTER'>SF4</scene>, <scene name='pdbligand=SO3:SULFITE+ION'>SO3</scene>, <scene name='pdbligand=SRM:SIROHEME'>SRM</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xsj OCA], [http://pdbe.org/2xsj PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xsj RCSB], [http://www.ebi.ac.uk/pdbsum/2xsj PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xsj ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xsj FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xsj OCA], [https://pdbe.org/2xsj PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xsj RCSB], [https://www.ebi.ac.uk/pdbsum/2xsj PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xsj ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q93UT1_DESNO Q93UT1_DESNO] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Desulfomicrobium norvegicum]] | | [[Category: Desulfomicrobium norvegicum]] |
- | [[Category: Hydrogensulfite reductase]] | + | [[Category: Large Structures]] |
- | [[Category: Archer, M]] | + | [[Category: Archer M]] |
- | [[Category: Khan, A R]] | + | [[Category: Khan AR]] |
- | [[Category: Oliveira, T F]] | + | [[Category: Oliveira TF]] |
- | [[Category: Pereira, I A.C]] | + | [[Category: Pereira IAC]] |
- | [[Category: Dissimilatory sulfite reductase]]
| + | |
- | [[Category: Dsrabc]]
| + | |
- | [[Category: Oxidoreductase]]
| + | |
- | [[Category: Sulfur metabolism]]
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| Structural highlights
Function
Q93UT1_DESNO
Publication Abstract from PubMed
Dissimilatory sulfite reductases (dSiRs) are crucial enzymes in bacterial sulfur-based energy metabolism, which are likely to have been present in some of the earliest life forms on Earth. Several classes of dSiRs have been proposed on the basis of different biochemical and spectroscopic properties, but it is not clear whether this corresponds to actual physiological or structural differences. Here, we describe the first structure of a dSiR from the desulforubidin class isolated from Desulfomicrobium norvegicum. The desulforubidin (Drub) structure is assembled as alpha(2)beta(2)gamma(2), in which two DsrC proteins are bound to the core [DsrA](2)[DsrB](2) unit, as reported for the desulfoviridin (Dvir) structure from Desulfovibrio vulgaris. Unlike Dvir, four sirohemes and eight [4Fe-4S] clusters are present in Drub. However, the structure indicates that only two of the Drub coupled siroheme-[4Fe-4S] cofactors are catalytically active. Mass spectrometry studies of purified Drub and Dvir show that both proteins present different oligomeric complex forms that bind two, one, or no DsrC proteins, providing an explanation for conflicting spectroscopic and biochemical results in the literature, and further indicating that DsrC is not a subunit of dSiR, but rather a protein with which it interacts.
Structural insights into dissimilatory sulfite reductases: structure of desulforubidin from desulfomicrobium norvegicum.,Oliveira TF, Franklin E, Afonso JP, Khan AR, Oldham NJ, Pereira IA, Archer M Front Microbiol. 2011;2:71. Epub 2011 Apr 13. PMID:21833321[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Oliveira TF, Franklin E, Afonso JP, Khan AR, Oldham NJ, Pereira IA, Archer M. Structural insights into dissimilatory sulfite reductases: structure of desulforubidin from desulfomicrobium norvegicum. Front Microbiol. 2011;2:71. Epub 2011 Apr 13. PMID:21833321 doi:10.3389/fmicb.2011.00071
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