4dko

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==Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with TS-II-224==
==Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with TS-II-224==
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<StructureSection load='4dko' size='340' side='right' caption='[[4dko]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
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<StructureSection load='4dko' size='340' side='right'caption='[[4dko]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4dko]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Hiv-1 Hiv-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DKO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DKO FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4dko]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Human_immunodeficiency_virus_type_1_(BRU_ISOLATE) Human immunodeficiency virus type 1 (BRU ISOLATE)]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DKO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DKO FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0LM:N-(4-CHLORO-3-FLUOROPHENYL)-N-(1,2,2,6,6-PENTAMETHYLPIPERIDIN-4-YL)ETHANEDIAMIDE'>0LM</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.981&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dkp|4dkp]], [[4dkq|4dkq]], [[4dkr|4dkr]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0LM:N-(4-CHLORO-3-FLUOROPHENYL)-N-(1,2,2,6,6-PENTAMETHYLPIPERIDIN-4-YL)ETHANEDIAMIDE'>0LM</scene>, <scene name='pdbligand=EPE:4-(2-HYDROXYETHYL)-1-PIPERAZINE+ETHANESULFONIC+ACID'>EPE</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">HIV-1 Env ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=11686 HIV-1])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dko FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dko OCA], [https://pdbe.org/4dko PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dko RCSB], [https://www.ebi.ac.uk/pdbsum/4dko PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dko ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dko FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dko OCA], [http://pdbe.org/4dko PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dko RCSB], [http://www.ebi.ac.uk/pdbsum/4dko PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dko ProSAT]</span></td></tr>
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</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q0ED31_9HIV1 Q0ED31_9HIV1] The envelope glyprotein gp160 precursor down-modulates cell surface CD4 antigen by interacting with it in the endoplasmic reticulum and blocking its transport to the cell surface (By similarity).[RuleBase:RU004292][SAAS:SAAS000328_004_020447] The gp120-gp41 heterodimer allows rapid transcytosis of the virus through CD4 negative cells such as simple epithelial monolayers of the intestinal, rectal and endocervical epithelial barriers. Both gp120 and gp41 specifically recognize glycosphingolipids galactosyl-ceramide (GalCer) or 3' sulfo-galactosyl-ceramide (GalS) present in the lipid rafts structures of epithelial cells. Binding to these alternative receptors allows the rapid transcytosis of the virus through the epithelial cells. This transcytotic vesicle-mediated transport of virions from the apical side to the basolateral side of the epithelial cells does not involve infection of the cells themselves (By similarity).
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
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*[[Gp120|Gp120]]
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*[[Gp120 3D structures|Gp120 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Hiv-1]]
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[[Category: Large Structures]]
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[[Category: Courter, J R]]
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[[Category: Courter JR]]
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[[Category: Freire, E]]
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[[Category: Freire E]]
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[[Category: III, A B.Smith]]
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[[Category: Jones DM]]
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[[Category: Jones, D M]]
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[[Category: Kobayashi T]]
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[[Category: Kobayashi, T]]
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[[Category: Kwon YD]]
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[[Category: Kwon, Y D]]
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[[Category: Kwong PD]]
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[[Category: Kwong, P D]]
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[[Category: LaLonde JM]]
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[[Category: LaLonde, J M]]
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[[Category: Madani N]]
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[[Category: Madani, N]]
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[[Category: Mascola J]]
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[[Category: Mascola, J]]
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[[Category: Princiotto AM]]
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[[Category: Princiotto, A M]]
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[[Category: Schon A]]
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[[Category: Schon, A]]
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[[Category: Smith III AB]]
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[[Category: Sodroski, J]]
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[[Category: Sodroski J]]
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[[Category: Soeta, T]]
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[[Category: Soeta T]]
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[[Category: Sun, A W]]
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[[Category: Sun AW]]
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[[Category: Wu, X]]
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[[Category: Wu X]]
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[[Category: Cd4 mimic]]
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[[Category: Clade a/e]]
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[[Category: Hiv-1 gp120]]
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[[Category: Ts-ii-224]]
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[[Category: Viral protein-inhibitor complex]]
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Current revision

Crystal structure of clade A/E 93TH057 HIV-1 gp120 core in complex with TS-II-224

PDB ID 4dko

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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