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1m3e

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[[Image:1m3e.gif|left|200px]]
 
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{{Structure
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==Succinyl-COA:3-ketoacid COA transferase from pig heart (selenomethionine)==
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|PDB= 1m3e |SIZE=350|CAPTION= <scene name='initialview01'>1m3e</scene>, resolution 2.5&Aring;
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<StructureSection load='1m3e' size='340' side='right'caption='[[1m3e]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>
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<table><tr><td colspan='2'>[[1m3e]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M3E OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1M3E FirstGlance]. <br>
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|ACTIVITY= <span class='plainlinks'>[http://en.wikipedia.org/wiki/3-oxoacid_CoA-transferase 3-oxoacid CoA-transferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.8.3.5 2.8.3.5] </span>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1m3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m3e OCA], [https://pdbe.org/1m3e PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1m3e RCSB], [https://www.ebi.ac.uk/pdbsum/1m3e PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1m3e ProSAT]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1m3e FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1m3e OCA], [http://www.ebi.ac.uk/pdbsum/1m3e PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1m3e RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/SCOT1_PIG SCOT1_PIG] Key enzyme for ketone body catabolism. Transfers the CoA moiety from succinate to acetoacetate. Formation of the enzyme-CoA intermediate proceeds via an unstable anhydride species formed between the carboxylate groups of the enzyme and substrate.
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== Evolutionary Conservation ==
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'''Succinyl-COA:3-ketoacid COA transferase from pig heart (selenomethionine)'''
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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==Overview==
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/m3/1m3e_consurf.spt"</scriptWhenChecked>
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Ketoacidosis affects patients who are deficient in the enzyme activity of succinyl-CoA:3-ketoacid CoA transferase (SCOT), since SCOT catalyses the activation of acetoacetate in the metabolism of ketone bodies. Thus far, structure/function analysis of the mammalian enzyme has been predicted based on the three-dimensional structure of a CoA transferase determined from an anaerobic bacterium that utilizes its enzyme for glutamate fermentation. To better interpret clinical data, we have determined the structure of a mammalian CoA transferase from pig heart by X-ray crystallography to 2.5 A resolution. Instrumental to the structure determination were selenomethionine substitution and the use of argon during purification and crystallization. Although pig heart SCOT adopts an alpha/beta protein fold, resembling the overall fold of the bacterial CoA transferase, several loops near the active site of pig heart SCOT follow different paths than the corresponding loops in the bacterial enzyme, accounting for differences in substrate specificities. Two missense mutations found associated with SCOT of ketoacidosis patients were mapped to a location in the structure that might disrupt the stabilization of the amino-terminal strand and thereby interfere with the proper folding of the protein into a functional enzyme.
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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==About this Structure==
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</jmolCheckbox>
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1M3E is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Sus_scrofa Sus scrofa]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1M3E OCA].
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1m3e ConSurf].
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<div style="clear:both"></div>
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==Reference==
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__TOC__
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Structure of the mammalian CoA transferase from pig heart., Bateman KS, Brownie ER, Wolodko WT, Fraser ME, Biochemistry. 2002 Dec 10;41(49):14455-62. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12463743 12463743]
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</StructureSection>
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[[Category: 3-oxoacid CoA-transferase]]
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[[Category: Large Structures]]
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[[Category: Single protein]]
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[[Category: Sus scrofa]]
[[Category: Sus scrofa]]
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[[Category: Bateman, K S.]]
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[[Category: Bateman KS]]
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[[Category: Brownie, E R.]]
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[[Category: Brownie ER]]
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[[Category: Fraser, M E.]]
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[[Category: Fraser ME]]
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[[Category: Wolodko, W T.]]
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[[Category: Wolodko WT]]
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[[Category: alpha/beta protein]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:10:46 2008''
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Current revision

Succinyl-COA:3-ketoacid COA transferase from pig heart (selenomethionine)

PDB ID 1m3e

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