4i7w

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (22:57, 26 March 2025) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Agrobacterium tumefaciens DHDPS with lysine and pyruvate==
==Agrobacterium tumefaciens DHDPS with lysine and pyruvate==
-
<StructureSection load='4i7w' size='340' side='right' caption='[[4i7w]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
+
<StructureSection load='4i7w' size='340' side='right'caption='[[4i7w]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4i7w]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Agrsh Agrsh]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I7W OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4I7W FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4i7w]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4I7W OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4I7W FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=KPI:(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC+ACID'>KPI</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=KPI:(2S)-2-AMINO-6-[(1-HYDROXY-1-OXO-PROPAN-2-YLIDENE)AMINO]HEXANOIC+ACID'>KPI</scene>, <scene name='pdbligand=LYS:LYSINE'>LYS</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4i7u|4i7u]], [[4i7v|4i7v]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4i7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i7w OCA], [https://pdbe.org/4i7w PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4i7w RCSB], [https://www.ebi.ac.uk/pdbsum/4i7w PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4i7w ProSAT]</span></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">dapA, AGROH133_05014 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=861208 AGRSH])</td></tr>
+
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-hydroxy-tetrahydrodipicolinate_synthase 4-hydroxy-tetrahydrodipicolinate synthase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.3.3.7 4.3.3.7] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4i7w FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4i7w OCA], [http://pdbe.org/4i7w PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4i7w RCSB], [http://www.ebi.ac.uk/pdbsum/4i7w PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4i7w ProSAT]</span></td></tr>
+
</table>
</table>
-
== Function ==
 
-
[[http://www.uniprot.org/uniprot/F0L8Z6_AGRSH F0L8Z6_AGRSH]] Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA) (By similarity).[HAMAP-Rule:MF_00418][SAAS:SAAS020625_004_011311]
 
==See Also==
==See Also==
Line 18: Line 13:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: 4-hydroxy-tetrahydrodipicolinate synthase]]
+
[[Category: Agrobacterium tumefaciens]]
-
[[Category: Agrsh]]
+
[[Category: Large Structures]]
-
[[Category: Atkinson, S C]]
+
[[Category: Atkinson SC]]
-
[[Category: Dobson, R C.J]]
+
[[Category: Dobson RCJ]]
-
[[Category: Dogovski, C]]
+
[[Category: Dogovski C]]
-
[[Category: Perugini, M A]]
+
[[Category: Perugini MA]]
-
[[Category: Biosynthetic protein]]
+
-
[[Category: Cytosol]]
+
-
[[Category: Lysine biosynthesis]]
+
-
[[Category: Pyruvate bound to acitve site lysine]]
+
-
[[Category: Tim barrel]]
+

Current revision

Agrobacterium tumefaciens DHDPS with lysine and pyruvate

PDB ID 4i7w

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools