3r6n

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==Crystal structure of a rigid four spectrin repeat fragment of the human desmoplakin plakin domain==
==Crystal structure of a rigid four spectrin repeat fragment of the human desmoplakin plakin domain==
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<StructureSection load='3r6n' size='340' side='right' caption='[[3r6n]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
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<StructureSection load='3r6n' size='340' side='right'caption='[[3r6n]], [[Resolution|resolution]] 2.95&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3r6n]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R6N OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3R6N FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3r6n]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3R6N OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3R6N FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D1D:(4S,5S)-1,2-DITHIANE-4,5-DIOL'>D1D</scene>, <scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.95&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">DSP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D1D:(4S,5S)-1,2-DITHIANE-4,5-DIOL'>D1D</scene>, <scene name='pdbligand=DTT:2,3-DIHYDROXY-1,4-DITHIOBUTANE'>DTT</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3r6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r6n OCA], [http://pdbe.org/3r6n PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3r6n RCSB], [http://www.ebi.ac.uk/pdbsum/3r6n PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3r6n ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3r6n FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3r6n OCA], [https://pdbe.org/3r6n PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3r6n RCSB], [https://www.ebi.ac.uk/pdbsum/3r6n PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3r6n ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/DESP_HUMAN DESP_HUMAN]] Defects in DSP are the cause of palmoplantar keratoderma striate type 2 (SPPK2) [MIM:[http://omim.org/entry/612908 612908]]; also known as keratosis palmoplantaris striata II. SPPK2 is characterized by skin thickening in the palms (linear pattern) and the soles (island-like pattern) and flexor aspect of the fingers. Abnormalities of the nails, the teeth and the hair are rarely present.<ref>PMID:9887343</ref> Defects in DSP are the cause of cardiomyopathy dilated with woolly hair and keratoderma (DCWHK) [MIM:[http://omim.org/entry/605676 605676]]; also known as Carvajal syndrome or palmoplantar keratoderma with left ventricular cardiomyopathy and woolly hair. DCWHK is an autosomal recessive cardiocutaneous syndrome characterized by a generalized striate keratoderma particularly affecting the palmoplantar epidermis, woolly hair, and dilated left ventricular cardiomyopathy.<ref>PMID:11063735</ref> Defects in DSP are the cause of familial arrhythmogenic right ventricular dysplasia type 8 (ARVD8) [MIM:[http://omim.org/entry/607450 607450]]; also known as arrhythmogenic right ventricular cardiomyopathy 8 (ARVC8). ARVD is an autosomal dominant disease characterized by partial degeneration of the myocardium of the right ventricle, electrical instability, and sudden death. It is clinically defined by electrocardiographic and angiographic criteria; pathologic findings, replacement of ventricular myocardium with fatty and fibrous elements, preferentially involve the right ventricular free wall.<ref>PMID:12373648</ref> <ref>PMID:15941723</ref> <ref>PMID:20031617</ref> Defects in DSP are the cause of skin fragility-woolly hair syndrome (SFWHS) [MIM:[http://omim.org/entry/607655 607655]]. SFWHS is an autosomal recessive genodermatosis characterized by focal and diffuse palmoplantar keratoderma, hyperkeratotic plaques on the trunk and limbs, and woolly hair with varying degrees of alopecia.<ref>PMID:11841538</ref> Defects in DSP are the cause of epidermolysis bullosa lethal acantholytic (EBLA) [MIM:[http://omim.org/entry/609638 609638]]. EBLA is characterized by severe fragility of skin and mucous membranes. The phenotype is lethal in the neonatal period because of immense transcutaneous fluid loss. Typical features include universal alopecia, neonatal teeth, and nail loss. Histopathology of the skin shows suprabasal clefting and acantholysis throughout the spinous layer, mimicking pemphigus.
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[https://www.uniprot.org/uniprot/DESP_HUMAN DESP_HUMAN] Defects in DSP are the cause of palmoplantar keratoderma striate type 2 (SPPK2) [MIM:[https://omim.org/entry/612908 612908]; also known as keratosis palmoplantaris striata II. SPPK2 is characterized by skin thickening in the palms (linear pattern) and the soles (island-like pattern) and flexor aspect of the fingers. Abnormalities of the nails, the teeth and the hair are rarely present.<ref>PMID:9887343</ref> Defects in DSP are the cause of cardiomyopathy dilated with woolly hair and keratoderma (DCWHK) [MIM:[https://omim.org/entry/605676 605676]; also known as Carvajal syndrome or palmoplantar keratoderma with left ventricular cardiomyopathy and woolly hair. DCWHK is an autosomal recessive cardiocutaneous syndrome characterized by a generalized striate keratoderma particularly affecting the palmoplantar epidermis, woolly hair, and dilated left ventricular cardiomyopathy.<ref>PMID:11063735</ref> Defects in DSP are the cause of familial arrhythmogenic right ventricular dysplasia type 8 (ARVD8) [MIM:[https://omim.org/entry/607450 607450]; also known as arrhythmogenic right ventricular cardiomyopathy 8 (ARVC8). ARVD is an autosomal dominant disease characterized by partial degeneration of the myocardium of the right ventricle, electrical instability, and sudden death. It is clinically defined by electrocardiographic and angiographic criteria; pathologic findings, replacement of ventricular myocardium with fatty and fibrous elements, preferentially involve the right ventricular free wall.<ref>PMID:12373648</ref> <ref>PMID:15941723</ref> <ref>PMID:20031617</ref> Defects in DSP are the cause of skin fragility-woolly hair syndrome (SFWHS) [MIM:[https://omim.org/entry/607655 607655]. SFWHS is an autosomal recessive genodermatosis characterized by focal and diffuse palmoplantar keratoderma, hyperkeratotic plaques on the trunk and limbs, and woolly hair with varying degrees of alopecia.<ref>PMID:11841538</ref> Defects in DSP are the cause of epidermolysis bullosa lethal acantholytic (EBLA) [MIM:[https://omim.org/entry/609638 609638]. EBLA is characterized by severe fragility of skin and mucous membranes. The phenotype is lethal in the neonatal period because of immense transcutaneous fluid loss. Typical features include universal alopecia, neonatal teeth, and nail loss. Histopathology of the skin shows suprabasal clefting and acantholysis throughout the spinous layer, mimicking pemphigus.
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/DESP_HUMAN DESP_HUMAN]] Major high molecular weight protein of desmosomes. Involved in the organization of the desmosomal cadherin-plakoglobin complexes into discrete plasma membrane domains and in the anchoring of intermediate filaments to the desmosomes.
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[https://www.uniprot.org/uniprot/DESP_HUMAN DESP_HUMAN] Major high molecular weight protein of desmosomes. Involved in the organization of the desmosomal cadherin-plakoglobin complexes into discrete plasma membrane domains and in the anchoring of intermediate filaments to the desmosomes.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The plakin protein family serves to connect cell-cell and cell-matrix adhesion molecules to the intermediate filament cytoskeleton. Desmoplakin (DP) is an integral part of desmosomes, where it links desmosomal cadherins to the intermediate filaments. The 1056-amino-acid N-terminal region of DP contains a plakin domain common to members of the plakin family. Plakin domains contain multiple copies of spectrin repeats (SRs). We determined the crystal structure of a fragment of DP, residues 175-630, consisting of four SRs and an inserted SH3 domain. The four repeats form an elongated, rigid structure. The SH3 domain is present in a loop between two helices of an SR and interacts extensively with the preceding SR in a manner that appears to limit inter-repeat flexibility. The intimate intramolecular association of the SH3 domain with the preceding SR is also observed in plectin, another plakin protein, but not in alpha-spectrin, suggesting that the SH3 domain of plakins contributes to the stability and rigidity of this subfamily of SR-containing proteins.
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Crystal structure of a rigid four-spectrin-repeat fragment of the human desmoplakin plakin domain.,Choi HJ, Weis WI J Mol Biol. 2011 Jun 24;409(5):800-12. Epub 2011 Apr 22. PMID:21536047<ref>PMID:21536047</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3r6n" style="background-color:#fffaf0;"></div>
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== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
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[[Category: Choi, H J]]
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[[Category: Large Structures]]
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[[Category: Weis, W I]]
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[[Category: Choi H-J]]
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[[Category: Cell adhesion]]
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[[Category: Weis WI]]
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[[Category: Desmosome]]
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[[Category: Sh3 domain]]
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[[Category: Spectrin repeat]]
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Current revision

Crystal structure of a rigid four spectrin repeat fragment of the human desmoplakin plakin domain

PDB ID 3r6n

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