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3oca

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Current revision (09:34, 6 September 2023) (edit) (undo)
 
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==Crystal structure of peptide deformylase from Ehrlichia chaffeensis==
==Crystal structure of peptide deformylase from Ehrlichia chaffeensis==
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<StructureSection load='3oca' size='340' side='right' caption='[[3oca]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
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<StructureSection load='3oca' size='340' side='right'caption='[[3oca]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3oca]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Ehrcr Ehrcr]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3OCA FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3oca]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ehrlichia_chaffeensis_str._Arkansas Ehrlichia chaffeensis str. Arkansas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3OCA OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3OCA FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">CDD:29602, def, ECH_0073 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=205920 EHRCR])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Peptide_deformylase Peptide deformylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.88 3.5.1.88] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3oca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oca OCA], [https://pdbe.org/3oca PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3oca RCSB], [https://www.ebi.ac.uk/pdbsum/3oca PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3oca ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3oca FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3oca OCA], [http://pdbe.org/3oca PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3oca RCSB], [http://www.ebi.ac.uk/pdbsum/3oca PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3oca ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/Q2GI30_EHRCR Q2GI30_EHRCR]] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
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[https://www.uniprot.org/uniprot/Q2GI30_EHRCR Q2GI30_EHRCR] Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions (By similarity).[HAMAP-Rule:MF_00163]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/3oca_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/oc/3oca_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Ehrcr]]
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[[Category: Ehrlichia chaffeensis str. Arkansas]]
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[[Category: Peptide deformylase]]
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[[Category: Large Structures]]
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[[Category: Structural genomic]]
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[[Category: Ehrlichia chaffeensis]]
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[[Category: Hydrolase]]
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[[Category: Ssgcid]]
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Current revision

Crystal structure of peptide deformylase from Ehrlichia chaffeensis

PDB ID 3oca

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