3fby

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==The crystal structure of the signature domain of cartilage oligomeric matrix protein.==
==The crystal structure of the signature domain of cartilage oligomeric matrix protein.==
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<StructureSection load='3fby' size='340' side='right' caption='[[3fby]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
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<StructureSection load='3fby' size='340' side='right'caption='[[3fby]], [[Resolution|resolution]] 3.15&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3fby]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FBY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3FBY FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3fby]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3FBY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3FBY FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.15&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">COMP, COMP(cartilage oligomeric matrix protein) ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3fby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fby OCA], [http://pdbe.org/3fby PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3fby RCSB], [http://www.ebi.ac.uk/pdbsum/3fby PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3fby ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3fby FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3fby OCA], [https://pdbe.org/3fby PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3fby RCSB], [https://www.ebi.ac.uk/pdbsum/3fby PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3fby ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
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[[http://www.uniprot.org/uniprot/COMP_HUMAN COMP_HUMAN]] Defects in COMP are the cause of multiple epiphyseal dysplasia type 1 (EDM1) [MIM:[http://omim.org/entry/132400 132400]]. EDM is a generalized skeletal dysplasia associated with significant morbidity. Joint pain, joint deformity, waddling gait, and short stature are the main clinical signs and symptoms. EDM is broadly categorized into the more severe Fairbank and the milder Ribbing types.<ref>PMID:11084047</ref> <ref>PMID:7670472</ref> <ref>PMID:9021009</ref> <ref>PMID:9184241</ref> <ref>PMID:9463320</ref> <ref>PMID:9921895</ref> <ref>PMID:9452026</ref> <ref>PMID:11565064</ref> <ref>PMID:21922596</ref> Defects in COMP are the cause of pseudoachondroplasia (PSACH) [MIM:[http://omim.org/entry/177170 177170]]. PSAC is a dominantly inherited chondrodysplasia characterized by short stature and early-onset osteoarthrosis. PSACH is more severe than EDM1 and is recognized in early childhood.<ref>PMID:10852928</ref> <ref>PMID:11084047</ref> <ref>PMID:7670472</ref> <ref>PMID:9184241</ref> <ref>PMID:9463320</ref> <ref>PMID:9921895</ref> <ref>PMID:9452026</ref> <ref>PMID:21922596</ref> <ref>PMID:7670471</ref> <ref>PMID:9452063</ref> <ref>PMID:11746045</ref> <ref>PMID:11746044</ref>
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[https://www.uniprot.org/uniprot/COMP_HUMAN COMP_HUMAN] Defects in COMP are the cause of multiple epiphyseal dysplasia type 1 (EDM1) [MIM:[https://omim.org/entry/132400 132400]. EDM is a generalized skeletal dysplasia associated with significant morbidity. Joint pain, joint deformity, waddling gait, and short stature are the main clinical signs and symptoms. EDM is broadly categorized into the more severe Fairbank and the milder Ribbing types.<ref>PMID:11084047</ref> <ref>PMID:7670472</ref> <ref>PMID:9021009</ref> <ref>PMID:9184241</ref> <ref>PMID:9463320</ref> <ref>PMID:9921895</ref> <ref>PMID:9452026</ref> <ref>PMID:11565064</ref> <ref>PMID:21922596</ref> Defects in COMP are the cause of pseudoachondroplasia (PSACH) [MIM:[https://omim.org/entry/177170 177170]. PSAC is a dominantly inherited chondrodysplasia characterized by short stature and early-onset osteoarthrosis. PSACH is more severe than EDM1 and is recognized in early childhood.<ref>PMID:10852928</ref> <ref>PMID:11084047</ref> <ref>PMID:7670472</ref> <ref>PMID:9184241</ref> <ref>PMID:9463320</ref> <ref>PMID:9921895</ref> <ref>PMID:9452026</ref> <ref>PMID:21922596</ref> <ref>PMID:7670471</ref> <ref>PMID:9452063</ref> <ref>PMID:11746045</ref> <ref>PMID:11746044</ref>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/COMP_HUMAN COMP_HUMAN]] May play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin. Can mediate the interaction of chondrocytes with the cartilage extracellular matrix through interaction with cell surface integrin receptors. Could play a role in the pathogenesis of osteoarthritis. Potent suppressor of apoptosis in both primary chondrocytes and transformed cells. Suppresses apoptosis by blocking the activation of caspase-3 and by inducing the IAP family of survival proteins (BIRC3, BIRC2, BIRC5 and XIAP). Essential for maintaining a vascular smooth muscle cells (VSMCs) contractile/differentiated phenotype under physiological and pathological stimuli. Maintains this phenotype of VSMCs by interacting with ITGA7 (By similarity).<ref>PMID:16051604</ref> <ref>PMID:16542502</ref> <ref>PMID:17993464</ref>
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[https://www.uniprot.org/uniprot/COMP_HUMAN COMP_HUMAN] May play a role in the structural integrity of cartilage via its interaction with other extracellular matrix proteins such as the collagens and fibronectin. Can mediate the interaction of chondrocytes with the cartilage extracellular matrix through interaction with cell surface integrin receptors. Could play a role in the pathogenesis of osteoarthritis. Potent suppressor of apoptosis in both primary chondrocytes and transformed cells. Suppresses apoptosis by blocking the activation of caspase-3 and by inducing the IAP family of survival proteins (BIRC3, BIRC2, BIRC5 and XIAP). Essential for maintaining a vascular smooth muscle cells (VSMCs) contractile/differentiated phenotype under physiological and pathological stimuli. Maintains this phenotype of VSMCs by interacting with ITGA7 (By similarity).<ref>PMID:16051604</ref> <ref>PMID:16542502</ref> <ref>PMID:17993464</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
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<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fb/3fby_consurf.spt"</scriptWhenChecked>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/fb/3fby_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Human]]
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[[Category: Homo sapiens]]
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[[Category: Lawler, J]]
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[[Category: Large Structures]]
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[[Category: Tan, K]]
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[[Category: Lawler J]]
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[[Category: Cartilage oligomeric matrix protein]]
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[[Category: Tan K]]
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[[Category: Cell adhesion]]
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[[Category: Comp]]
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[[Category: Disease mutation]]
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[[Category: Dwarfism]]
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[[Category: E4t3c5]]
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[[Category: Egf-like domain]]
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[[Category: Glycoprotein]]
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[[Category: Secreted]]
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[[Category: Signature domain]]
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Current revision

The crystal structure of the signature domain of cartilage oligomeric matrix protein.

PDB ID 3fby

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