4h3a

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:59, 20 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-1330==
==Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-1330==
-
<StructureSection load='4h3a' size='340' side='right' caption='[[4h3a]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
+
<StructureSection load='4h3a' size='340' side='right'caption='[[4h3a]], [[Resolution|resolution]] 1.98&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4h3a]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_coli"_migula_1895 "bacillus coli" migula 1895]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H3A OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4H3A FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4h3a]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4H3A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4H3A FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=0YY:(2Z)-2-HYDROXY-4-[4-(OCTYLOXY)PHENYL]-4-OXOBUT-2-ENOIC+ACID'>0YY</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.98&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4h2j|4h2j]], [[4h2m|4h2m]], [[4h2o|4h2o]], [[4h38|4h38]], [[4h3c|4h3c]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=0YY:(2Z)-2-HYDROXY-4-[4-(OCTYLOXY)PHENYL]-4-OXOBUT-2-ENOIC+ACID'>0YY</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">uppS, ispU, rth, yaeS, b0174, JW0169 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=562 "Bacillus coli" Migula 1895])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4h3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h3a OCA], [https://pdbe.org/4h3a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4h3a RCSB], [https://www.ebi.ac.uk/pdbsum/4h3a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4h3a ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Ditrans,polycis-undecaprenyl-diphosphate_synthase_((2E,6E)-farnesyl-_diphosphate_specific) Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl- diphosphate specific)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.31 2.5.1.31] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4h3a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4h3a OCA], [http://pdbe.org/4h3a PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4h3a RCSB], [http://www.ebi.ac.uk/pdbsum/4h3a PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4h3a ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/UPPS_ECOLI UPPS_ECOLI]] Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate (FPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.<ref>PMID:12756244</ref>
+
[https://www.uniprot.org/uniprot/UPPS_ECOLI UPPS_ECOLI] Generates ditrans,octacis-undecaprenyl pyrophosphate (UPP) from isopentenyl pyrophosphate (IPP) and farnesyl diphosphate (FPP). UPP is the precursor of glycosyl carrier lipid in the biosynthesis of bacterial cell wall polysaccharide components such as peptidoglycan and lipopolysaccharide.<ref>PMID:12756244</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 28: Line 26:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus coli migula 1895]]
+
[[Category: Escherichia coli]]
-
[[Category: Oldfield, E]]
+
[[Category: Large Structures]]
-
[[Category: Zhu, W]]
+
[[Category: Oldfield E]]
-
[[Category: Alpha-helix]]
+
[[Category: Zhu W]]
-
[[Category: Cell wall biosynthesis]]
+
-
[[Category: Farnesyl diphosphate binding]]
+
-
[[Category: Isopentenyl diphosphate binding]]
+
-
[[Category: Prenyl transferase]]
+
-
[[Category: Prenyl transferase inhibitor complex]]
+
-
[[Category: Transferase-transferase inhibitor complex]]
+

Current revision

Structure of E. coli undecaprenyl diphosphate synthase in complex with BPH-1330

PDB ID 4h3a

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools