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4apz

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==Structure of B. subtilis genomic dUTPase YncF in complex with dU, PPi and Mg in P1==
==Structure of B. subtilis genomic dUTPase YncF in complex with dU, PPi and Mg in P1==
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<StructureSection load='4apz' size='340' side='right' caption='[[4apz]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
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<StructureSection load='4apz' size='340' side='right'caption='[[4apz]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[4apz]] is a 48 chain structure with sequence from [http://en.wikipedia.org/wiki/"bacillus_globigii"_migula_1900 "bacillus globigii" migula 1900]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4APZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4APZ FirstGlance]. <br>
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<table><tr><td colspan='2'>[[4apz]] is a 48 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis Bacillus subtilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4APZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4APZ FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=DUR:2-DEOXYURIDINE'>DUR</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2xcd|2xcd]], [[2xce|2xce]], [[4aoo|4aoo]], [[4aoz|4aoz]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DUR:2-DEOXYURIDINE'>DUR</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene>, <scene name='pdbligand=POP:PYROPHOSPHATE+2-'>POP</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/dUTP_diphosphatase dUTP diphosphatase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.6.1.23 3.6.1.23] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4apz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4apz OCA], [https://pdbe.org/4apz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4apz RCSB], [https://www.ebi.ac.uk/pdbsum/4apz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4apz ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4apz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4apz OCA], [http://pdbe.org/4apz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4apz RCSB], [http://www.ebi.ac.uk/pdbsum/4apz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4apz ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/YNCF_BACSU YNCF_BACSU]] This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA (By similarity).
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[https://www.uniprot.org/uniprot/YNCF_BACSU YNCF_BACSU] This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA (By similarity).
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
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*[[Deoxyuridine 5'-triphosphate nucleotidohydrolase|Deoxyuridine 5'-triphosphate nucleotidohydrolase]]
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*[[DUTPase 3D structures|DUTPase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Bacillus globigii migula 1900]]
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[[Category: Bacillus subtilis]]
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[[Category: DUTP diphosphatase]]
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[[Category: Large Structures]]
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[[Category: Garcia-Nafria, J]]
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[[Category: Garcia-Nafria J]]
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[[Category: Harrison, C]]
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[[Category: Harrison C]]
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[[Category: Timm, J]]
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[[Category: Timm J]]
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[[Category: Turkenburg, J P]]
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[[Category: Turkenburg JP]]
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[[Category: Wilson, K S]]
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[[Category: Wilson KS]]
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[[Category: Hydrolase]]
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[[Category: Yncf]]
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Current revision

Structure of B. subtilis genomic dUTPase YncF in complex with dU, PPi and Mg in P1

PDB ID 4apz

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