This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3gpi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:55, 21 February 2024) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus==
==Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus==
-
<StructureSection load='3gpi' size='340' side='right' caption='[[3gpi]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
+
<StructureSection load='3gpi' size='340' side='right'caption='[[3gpi]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3gpi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metfk Metfk]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GPI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3GPI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3gpi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methylobacillus_flagellatus_KT Methylobacillus flagellatus KT]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3GPI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3GPI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.44&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Mfla_2045 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=265072 METFK])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3gpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gpi OCA], [http://pdbe.org/3gpi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3gpi RCSB], [http://www.ebi.ac.uk/pdbsum/3gpi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3gpi ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3gpi TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3gpi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3gpi OCA], [https://pdbe.org/3gpi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3gpi RCSB], [https://www.ebi.ac.uk/pdbsum/3gpi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3gpi ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3gpi TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q1GZM5_METFK Q1GZM5_METFK]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/3gpi_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/gp/3gpi_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Metfk]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Methylobacillus flagellatus KT]]
-
[[Category: Burley, S K]]
+
[[Category: Almo SC]]
-
[[Category: Morano, C]]
+
[[Category: Burley SK]]
-
[[Category: Structural genomic]]
+
[[Category: Morano C]]
-
[[Category: Ramagopal, U A]]
+
[[Category: Ramagopal UA]]
-
[[Category: Dehydratase]]
+
-
[[Category: Epimerase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Unknown function]]
+

Current revision

Structure of putative NAD-dependent epimerase/dehydratase from methylobacillus flagellatus

PDB ID 3gpi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools