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1mkp

From Proteopedia

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[[Image:1mkp.jpg|left|200px]]
 
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{{Structure
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==CRYSTAL STRUCTURE OF PYST1 (MKP3)==
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|PDB= 1mkp |SIZE=350|CAPTION= <scene name='initialview01'>1mkp</scene>, resolution 2.35&Aring;
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<StructureSection load='1mkp' size='340' side='right'caption='[[1mkp]], [[Resolution|resolution]] 2.35&Aring;' scene=''>
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|SITE=
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== Structural highlights ==
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|LIGAND= <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene>
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<table><tr><td colspan='2'>[[1mkp]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MKP OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1MKP FirstGlance]. <br>
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|ACTIVITY=
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.35&#8491;</td></tr>
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|GENE=
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
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|DOMAIN=
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1mkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mkp OCA], [https://pdbe.org/1mkp PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1mkp RCSB], [https://www.ebi.ac.uk/pdbsum/1mkp PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1mkp ProSAT]</span></td></tr>
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|RELATEDENTRY=
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</table>
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1mkp FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1mkp OCA], [http://www.ebi.ac.uk/pdbsum/1mkp PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1mkp RCSB]</span>
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== Function ==
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}}
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[https://www.uniprot.org/uniprot/DUS6_HUMAN DUS6_HUMAN] Inactivates MAP kinases. Has a specificity for the ERK family.
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== Evolutionary Conservation ==
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[[Image:Consurf_key_small.gif|200px|right]]
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Check<jmol>
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<jmolCheckbox>
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<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/mk/1mkp_consurf.spt"</scriptWhenChecked>
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<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
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<text>to colour the structure by Evolutionary Conservation</text>
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</jmolCheckbox>
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1mkp ConSurf].
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<div style="clear:both"></div>
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'''CRYSTAL STRUCTURE OF PYST1 (MKP3)'''
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==See Also==
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*[[MAP kinase phosphatase|MAP kinase phosphatase]]
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__TOC__
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==Overview==
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</StructureSection>
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The crystal structure of the catalytic domain from the MAPK phosphatase Pyst1 (Pyst1-CD) has been determined at 2.35 A. The structure adopts a protein tyrosine phosphatase (PTPase) fold with a shallow active site that displays a distorted geometry in the absence of its substrate with some similarity to the dual-specificity phosphatase cdc25. Functional characterization of Pyst1-CD indicates it is sufficient to dephosphorylate activated ERK2 in vitro. Kinetic analysis of Pyst1 and Pyst1-CD using the substrate p-nitrophenyl phosphate (pNPP) reveals that both molecules undergo catalytic activation in the presence of recombinant inactive ERK2, switching from a low- to high-activity form. Mutation of Asp 262, located 5.5 A distal to the active site, demonstrates it is essential for catalysis in the high-activity ERK2-dependent conformation of Pyst1 but not for the low-activity ERK2-independent form, suggesting that ERK2 induces closure of the Asp 262 loop over the active site, thereby enhancing Pyst1 catalytic efficiency.
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==About this Structure==
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1MKP is a [[Single protein]] structure of sequence from [http://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1MKP OCA].
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==Reference==
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Crystal structure of the MAPK phosphatase Pyst1 catalytic domain and implications for regulated activation., Stewart AE, Dowd S, Keyse SM, McDonald NQ, Nat Struct Biol. 1999 Feb;6(2):174-81. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/10048930 10048930]
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[[Category: Homo sapiens]]
[[Category: Homo sapiens]]
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[[Category: Single protein]]
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[[Category: Large Structures]]
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[[Category: Dowd, S.]]
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[[Category: Dowd S]]
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[[Category: Keyse, S.]]
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[[Category: Keyse S]]
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[[Category: Mcdonald, N Q.]]
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[[Category: Mcdonald NQ]]
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[[Category: Stewart, A E.]]
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[[Category: Stewart AE]]
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[[Category: hydrolase]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:17:20 2008''
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Current revision

CRYSTAL STRUCTURE OF PYST1 (MKP3)

PDB ID 1mkp

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