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| ==Refined Structure of the functional unit (KLH1-H) of keyhole limpet hemocyanin== | | ==Refined Structure of the functional unit (KLH1-H) of keyhole limpet hemocyanin== |
- | <StructureSection load='3qjo' size='340' side='right' caption='[[3qjo]], [[Resolution|resolution]] 4.00Å' scene=''> | + | <StructureSection load='3qjo' size='340' side='right'caption='[[3qjo]], [[Resolution|resolution]] 4.00Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3qjo]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Megathura_crenulata Megathura crenulata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QJO OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3QJO FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3qjo]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Megathura_crenulata Megathura crenulata]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3QJO OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3QJO FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 4Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3l6w|3l6w]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3qjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qjo OCA], [http://pdbe.org/3qjo PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3qjo RCSB], [http://www.ebi.ac.uk/pdbsum/3qjo PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3qjo ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3qjo FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3qjo OCA], [https://pdbe.org/3qjo PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3qjo RCSB], [https://www.ebi.ac.uk/pdbsum/3qjo PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3qjo ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/HCY1_MEGCR HCY1_MEGCR] Hemocyanins are copper-containing oxygen carriers occurring freely dissolved in the hemolymph of many mollusks and arthropods.<ref>PMID:8829804</ref> |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
| + | [[Category: Large Structures]] |
| [[Category: Megathura crenulata]] | | [[Category: Megathura crenulata]] |
- | [[Category: Buchler, K]] | + | [[Category: Buchler K]] |
- | [[Category: Decker, H]] | + | [[Category: Decker H]] |
- | [[Category: Jaenicke, E]] | + | [[Category: Jaenicke E]] |
- | [[Category: Markl, J]] | + | [[Category: Markl J]] |
- | [[Category: Schroder, G F]] | + | [[Category: Schroder GF]] |
- | [[Category: Hemolymph]]
| + | |
- | [[Category: Oxygen binding]]
| + | |
- | [[Category: Pf00264]]
| + | |
| Structural highlights
Function
HCY1_MEGCR Hemocyanins are copper-containing oxygen carriers occurring freely dissolved in the hemolymph of many mollusks and arthropods.[1]
Publication Abstract from PubMed
Hemocyanins are multimeric oxygen-transport proteins in the hemolymph of many arthropods and mollusks. The overall molecular architecture of arthropod and molluscan hemocyanin is very different, although they possess a similar binuclear type 3 copper center to bind oxygen in a side-on conformation. Gastropod hemocyanin is a 35 nm cylindrical didecamer (2 x 10-mer) based on a 400 kDa subunit. The latter is subdivided into eight paralogous "functional units" (FU-a to FU-h), each with an active site. FU-a to FU-f contribute to the cylinder wall, whereas FU-g and FU-h form the internal collar complex. Atomic structures of FU-e and FU-g, and a 9 A cryoEM structure of the 8 MDa didecamer are available. Recently, the structure of keyhole limpet hemocyanin FU-h (KLH1-h) was presented as a C(alpha) -trace at 4 A resolution. Unlike the other seven FU types, FU-h contains an additional C-terminal domain with a cupredoxin-like fold. Because of the resolution limit of 4 A, in some loops, the course of the protein backbone could not be established with high certainty yet. Here, we present a refined atomic structure of FU-h (KLH1-h) obtained from low-resolution refinement, which unambiguously establishes the course of the polypeptide backbone and reveals the disulfide bridges as well as the orientation of bulky amino acids.
The refined structure of functional unit h of keyhole limpet hemocyanin (KLH1-h) reveals disulfide bridges.,Jaenicke E, Buchler K, Decker H, Markl J, Schroder GF IUBMB Life. 2011 Mar;63(3):183-7. doi: 10.1002/iub.435. PMID:21445849[2]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Swerdlow RD, Ebert RF, Lee P, Bonaventura C, Miller KI. Keyhole limpet hemocyanin: structural and functional characterization of two different subunits and multimers. Comp Biochem Physiol B Biochem Mol Biol. 1996 Mar;113(3):537-48. PMID:8829804 doi:10.1016/0305-0491(95)02091-8
- ↑ Jaenicke E, Buchler K, Decker H, Markl J, Schroder GF. The refined structure of functional unit h of keyhole limpet hemocyanin (KLH1-h) reveals disulfide bridges. IUBMB Life. 2011 Mar;63(3):183-7. doi: 10.1002/iub.435. PMID:21445849 doi:10.1002/iub.435
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