This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3nxk

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (09:23, 6 September 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni==
==Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni==
-
<StructureSection load='3nxk' size='340' side='right' caption='[[3nxk]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
+
<StructureSection load='3nxk' size='340' side='right'caption='[[3nxk]], [[Resolution|resolution]] 2.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3nxk]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Camje Camje]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NXK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3NXK FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3nxk]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Campylobacter_jejuni_subsp._jejuni_NCTC_11168_=_ATCC_700819 Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3NXK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3NXK FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.4&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACY:ACETIC+ACID'>ACY</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ansA, Cj0029 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=192222 CAMJE])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3nxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nxk OCA], [https://pdbe.org/3nxk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3nxk RCSB], [https://www.ebi.ac.uk/pdbsum/3nxk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3nxk ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Asparaginase Asparaginase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.1 3.5.1.1] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3nxk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3nxk OCA], [http://pdbe.org/3nxk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3nxk RCSB], [http://www.ebi.ac.uk/pdbsum/3nxk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3nxk ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q0PC96_CAMJE Q0PC96_CAMJE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nx/3nxk_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/nx/3nxk_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 22: Line 22:
==See Also==
==See Also==
-
*[[Asparaginase|Asparaginase]]
+
*[[Asparaginase 3D structures|Asparaginase 3D structures]]
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Asparaginase]]
+
[[Category: Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819]]
-
[[Category: Camje]]
+
[[Category: Large Structures]]
-
[[Category: Anderson, W F]]
+
[[Category: Anderson WF]]
-
[[Category: Structural genomic]]
+
[[Category: Joachimiak A]]
-
[[Category: Joachimiak, A]]
+
[[Category: Kim Y]]
-
[[Category: Kim, Y]]
+
[[Category: Makowska-Grzyska M]]
-
[[Category: Makowska-Grzyska, M]]
+
[[Category: Maltseva N]]
-
[[Category: Maltseva, N]]
+
[[Category: Papazisi L]]
-
[[Category: Papazisi, L]]
+
-
[[Category: Alpha-beta-alpha sandwich]]
+
-
[[Category: Csgid]]
+
-
[[Category: Cytoplasmic l-asparaginase]]
+
-
[[Category: Hydrolase]]
+

Current revision

Crystal Structure of Probable Cytoplasmic L-asparaginase from Campylobacter jejuni

PDB ID 3nxk

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools