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2zvx

From Proteopedia

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Structure of a BPTI-[5,55] variant containing Gly/Val at the 14/38th positions

Structural highlights

2zvx is a 2 chain structure with sequence from Bos taurus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.09Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

BPT1_BOVIN Inhibits trypsin, kallikrein, chymotrypsin, and plasmin.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Enhancing protein conformational stability is an important aspect of protein engineering and biotechnology. However, protein stabilization is difficult to rationalize as it often results from the small cumulative and intertwined effects of multiple mutations. Here, we analyzed the mechanisms behind a remarkable 13 degrees stabilization produced by a single A14G and a double A14GA38V mutation in BPTI-[5,55], a natively folded bovine pancreatic trypsin inhibitor variant. Differential scanning calorimetry analysis of three BPTI-[5,55] variants (A14G, A38V, and A14GA38V) indicated that the A14G mutation stabilized the structure enthalpically, whereas the A38V stabilization was entropy driven. We also determined the structure of the A14GA38V mutant at 1.09 A resolution, whereas the A38V variant did not crystallize, and we previously reported the A14G variant's structure (2ZJX). The overall structures of the A14G and A14GA38V variants were very similar to that of wild-type BPTI, but small local structure perturbations around residues 14 and 38 strongly suggested potential factors contributing to the enthalpy stabilization. First, the A14G mutation displaced the local backbone structures around residues 14 and 38 by up to 0.7 A, presumably increasing local van der Waals interactions. Next, this displacement produced steric clashes between neighboring residue's side-chains in all but the variants containing the A14G mutation. Noteworthy, these clashes are not predicted from the wild type BPTI structure. These observations provide one of the first unambiguous analyses of how a subtle interplay between the sidechain and backbone structures can have a major effect on protein stability. Proteins 2009. (c) 2009 Wiley-Liss, Inc.

Thermodynamic and structural analysis of highly stabilized BPTIs by single and double mutations.,Islam MM, Sohya S, Noguchi K, Kidokoro S, Yohda M, Kuroda Y Proteins. 2009 Dec;77(4):962-70. PMID:19830687^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Islam MM, Sohya S, Noguchi K, Kidokoro S, Yohda M, Kuroda Y. Thermodynamic and structural analysis of highly stabilized BPTIs by single and double mutations. Proteins. 2009 Dec;77(4):962-70. PMID:19830687 doi:10.1002/prot.22522

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/2zvx"

@@ Line 1: / Line 1: @@
 ==Structure of a BPTI-[5,55] variant containing Gly/Val at the 14/38th positions==
-<StructureSection load='2zvx' size='340' side='right' caption='[[2zvx]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
+<StructureSection load='2zvx' size='340' side='right'caption='[[2zvx]], [[Resolution|resolution]] 1.09&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[2zvx]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bovin Bovin]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZVX OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2ZVX FirstGlance]. <br>
+<table><tr><td colspan='2'>[[2zvx]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bos_taurus Bos taurus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2ZVX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2ZVX FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.09&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2zjx|2zjx]], [[3ci7|3ci7]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2zvx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zvx OCA], [http://pdbe.org/2zvx PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2zvx RCSB], [http://www.ebi.ac.uk/pdbsum/2zvx PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2zvx ProSAT]</span></td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2zvx FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2zvx OCA], [https://pdbe.org/2zvx PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2zvx RCSB], [https://www.ebi.ac.uk/pdbsum/2zvx PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2zvx ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[http://www.uniprot.org/uniprot/BPT1_BOVIN BPT1_BOVIN]] Inhibits trypsin, kallikrein, chymotrypsin, and plasmin.
+[https://www.uniprot.org/uniprot/BPT1_BOVIN BPT1_BOVIN] Inhibits trypsin, kallikrein, chymotrypsin, and plasmin.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
 Check<jmol>
   <jmolCheckbox>
-    <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zv/2zvx_consurf.spt"</scriptWhenChecked>
+    <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/zv/2zvx_consurf.spt"</scriptWhenChecked>
     <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
     <text>to colour the structure by Evolutionary Conservation</text>
@@ Line 31: / Line 31: @@
 ==See Also==
-*[[Basic Pancreatic Trypsin Inhibitor|Basic Pancreatic Trypsin Inhibitor]]
+*[[BPTI 3D structures|BPTI 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Bovin]]
+[[Category: Bos taurus]]
-[[Category: Islam, M M]]
+[[Category: Large Structures]]
-[[Category: Kuroda, Y]]
+[[Category: Islam MM]]
-[[Category: Noguchi, K]]
+[[Category: Kuroda Y]]
-[[Category: Sohya, S]]
+[[Category: Noguchi K]]
-[[Category: Yohda, M]]
+[[Category: Sohya S]]
-[[Category: Disulfide bond]]
+[[Category: Yohda M]]
-[[Category: Hydrolase inhibitor]]
-[[Category: Protease inhibitor]]
-[[Category: Protein design]]
-[[Category: Protein folding]]
-[[Category: Protein stabilization]]
-[[Category: Secreted]]
-[[Category: Serine protease inhibitor]]

2zvx

From Proteopedia

Current revision

Structure of a BPTI-[5,55] variant containing Gly/Val at the 14/38th positions

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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