This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3o2o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:03, 14 February 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Structure of E. coli ClpS ring complex==
==Structure of E. coli ClpS ring complex==
-
<StructureSection load='3o2o' size='340' side='right' caption='[[3o2o]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
+
<StructureSection load='3o2o' size='340' side='right'caption='[[3o2o]], [[Resolution|resolution]] 2.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3o2o]] is a 8 chain structure with sequence from [http://en.wikipedia.org/wiki/Ecoli Ecoli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O2O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3O2O FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3o2o]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3O2O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3O2O FirstGlance]. <br>
-
</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2wa9|2wa9]], [[3o2h|3o2h]], [[3o2b|3o2b]], [[3o1f|3o1f]]</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">clpS ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=83333 ECOLI])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3o2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o2o OCA], [https://pdbe.org/3o2o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3o2o RCSB], [https://www.ebi.ac.uk/pdbsum/3o2o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3o2o ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3o2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3o2o OCA], [http://pdbe.org/3o2o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3o2o RCSB], [http://www.ebi.ac.uk/pdbsum/3o2o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3o2o ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/CLPS_ECOLI CLPS_ECOLI]] Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation.
+
[https://www.uniprot.org/uniprot/CLPS_ECOLI CLPS_ECOLI] Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation.
-
<div style="background-color:#fffaf0;">
+
-
== Publication Abstract from PubMed ==
+
-
In Escherichia coli, the ClpAP protease, together with the adaptor protein ClpS, is responsible for the degradation of proteins bearing an amino-terminal destabilizing amino acid (N-degron). Here, we determined the three-dimensional structures of ClpS in complex with three peptides, each having a different destabilizing residue--Leu, Phe or Trp--at its N terminus. All peptides, regardless of the identity of their N-terminal residue, are bound in a surface pocket on ClpS in a stereo-specific manner. Several highly conserved residues in this binding pocket interact directly with the backbone of the N-degron peptide and hence are crucial for the binding of all N-degrons. By contrast, two hydrophobic residues define the volume of the binding pocket and influence the specificity of ClpS. Taken together, our data suggest that ClpS has been optimized for the binding and delivery of N-degrons containing an N-terminal Phe or Leu.
+
-
Structural basis of N-end rule substrate recognition in Escherichia coli by the ClpAP adaptor protein ClpS.,Schuenemann VJ, Kralik SM, Albrecht R, Spall SK, Truscott KN, Dougan DA, Zeth K EMBO Rep. 2009 May;10(5):508-14. Epub 2009 Apr 17. PMID:19373253<ref>PMID:19373253</ref>
+
==See Also==
-
 
+
*[[ATP-dependent Clp protease adaptor protein 3D structures|ATP-dependent Clp protease adaptor protein 3D structures]]
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
+
-
</div>
+
-
<div class="pdbe-citations 3o2o" style="background-color:#fffaf0;"></div>
+
-
== References ==
+
-
<references/>
+
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Ecoli]]
+
[[Category: Escherichia coli K-12]]
-
[[Category: Baker, T A]]
+
[[Category: Large Structures]]
-
[[Category: Grant, R A]]
+
[[Category: Baker TA]]
-
[[Category: Regt, A de]]
+
[[Category: Grant RA]]
-
[[Category: Roman-Hernandez, G]]
+
[[Category: Roman-Hernandez G]]
-
[[Category: Sauer, R T]]
+
[[Category: Sauer RT]]
-
[[Category: Adaptor]]
+
[[Category: De Regt A]]
-
[[Category: N-end rule peptide]]
+
-
[[Category: Peptide binding protein]]
+
-
[[Category: Peptide-binding protein]]
+

Current revision

Structure of E. coli ClpS ring complex

PDB ID 3o2o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3o2o"
Personal tools