4mz3

From Proteopedia

(Difference between revisions)

Current revision

Crystal structure of the voltage-gated sodium channel beta 4 subunit extracellular domain, C131W mutant

Structural highlights

4mz3 is a 2 chain structure with sequence from Homo sapiens. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.741Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Disease

SCN4B_HUMAN Romano-Ward syndrome. The disease is caused by mutations affecting the gene represented in this entry.

Function

SCN4B_HUMAN Modulates channel gating kinetics. Causes negative shifts in the voltage dependence of activation of certain alpha sodium channels, but does not affect the voltage dependence of inactivation (By similarity).

Publication Abstract from PubMed

Voltage-gated sodium (Nav) channels are embedded in a multicomponent membrane signaling complex that plays a crucial role in cellular excitability. Although the mechanism remains unclear, beta-subunits modify Nav channel function and cause debilitating disorders when mutated. While investigating whether beta-subunits also influence ligand interactions, we found that beta4 dramatically alters toxin binding to Nav1.2. To explore these observations further, we solved the crystal structure of the extracellular beta4 domain and identified (58)Cys as an exposed residue that, when mutated, eliminates the influence of beta4 on toxin pharmacology. Moreover, our results suggest the presence of a docking site that is maintained by a cysteine bridge buried within the hydrophobic core of beta4. Disrupting this bridge by introducing a beta1 mutation implicated in epilepsy repositions the (58)Cys-containing loop and disrupts beta4 modulation of Nav1.2. Overall, the principles emerging from this work (i) help explain tissue-dependent variations in Nav channel pharmacology; (ii) enable the mechanistic interpretation of beta-subunit-related disorders; and (iii) provide insights in designing molecules capable of correcting aberrant beta-subunit behavior.

Crystallographic insights into sodium-channel modulation by the beta4 subunit.,Gilchrist J, Das S, Van Petegem F, Bosmans F Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):E5016-24. doi:, 10.1073/pnas.1314557110. Epub 2013 Dec 2. PMID:24297919^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Gilchrist J, Das S, Van Petegem F, Bosmans F. Crystallographic insights into sodium-channel modulation by the beta4 subunit. Proc Natl Acad Sci U S A. 2013 Dec 17;110(51):E5016-24. doi:, 10.1073/pnas.1314557110. Epub 2013 Dec 2. PMID:24297919 doi:http://dx.doi.org/10.1073/pnas.1314557110

1 Structural highlights
2 Disease
3 Function
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/4mz3"

Categories: Homo sapiens | Large Structures | Das S | Van Petegem F

@@ Line 1: / Line 1: @@
 ==Crystal structure of the voltage-gated sodium channel beta 4 subunit extracellular domain, C131W mutant==
-<StructureSection load='4mz3' size='340' side='right' caption='[[4mz3]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
+<StructureSection load='4mz3' size='340' side='right'caption='[[4mz3]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[4mz3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MZ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4MZ3 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[4mz3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4MZ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4MZ3 FirstGlance]. <br>
-</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.741&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4mz2|4mz2]]</td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CME:S,S-(2-HYDROXYETHYL)THIOCYSTEINE'>CME</scene></td></tr>
-<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SCN4B ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4mz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mz3 OCA], [https://pdbe.org/4mz3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4mz3 RCSB], [https://www.ebi.ac.uk/pdbsum/4mz3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4mz3 ProSAT]</span></td></tr>
-<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4mz3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4mz3 OCA], [http://pdbe.org/4mz3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4mz3 RCSB], [http://www.ebi.ac.uk/pdbsum/4mz3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4mz3 ProSAT]</span></td></tr>
 </table>
 == Disease ==
-[[http://www.uniprot.org/uniprot/SCN4B_HUMAN SCN4B_HUMAN]] Romano-Ward syndrome. The disease is caused by mutations affecting the gene represented in this entry.
+[https://www.uniprot.org/uniprot/SCN4B_HUMAN SCN4B_HUMAN] Romano-Ward syndrome. The disease is caused by mutations affecting the gene represented in this entry.
 == Function ==
-[[http://www.uniprot.org/uniprot/SCN4B_HUMAN SCN4B_HUMAN]] Modulates channel gating kinetics. Causes negative shifts in the voltage dependence of activation of certain alpha sodium channels, but does not affect the voltage dependence of inactivation (By similarity).
+[https://www.uniprot.org/uniprot/SCN4B_HUMAN SCN4B_HUMAN] Modulates channel gating kinetics. Causes negative shifts in the voltage dependence of activation of certain alpha sodium channels, but does not affect the voltage dependence of inactivation (By similarity).
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 24: / Line 23: @@
 ==See Also==
-*[[Ion channels|Ion channels]]
+*[[Ion channels 3D structures|Ion channels 3D structures]]
 == References ==
 <references/>
 __TOC__
 </StructureSection>
-[[Category: Human]]
+[[Category: Homo sapiens]]
-[[Category: Das, S]]
+[[Category: Large Structures]]
-[[Category: Petegem, F Van]]
+[[Category: Das S]]
-[[Category: Extracellular]]
+[[Category: Van Petegem F]]
-[[Category: Ion conductance]]
-[[Category: Membrane protein]]

4mz3

From Proteopedia

Current revision

Crystal structure of the voltage-gated sodium channel beta 4 subunit extracellular domain, C131W mutant

Structural highlights

Disease

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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