This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3kie

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:16, 6 September 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
-
{{Large structure}}
+
 
==Crystal structure of adeno-associated virus serotype 3B==
==Crystal structure of adeno-associated virus serotype 3B==
-
<StructureSection load='3kie' size='340' side='right' caption='[[3kie]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
+
<StructureSection load='3kie' size='340' side='right'caption='[[3kie]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3kie]] is a 20 chain structure with sequence from [http://en.wikipedia.org/wiki/Adeno-associated_virus_3b Adeno-associated virus 3b]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KIE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3KIE FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3kie]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Adeno-associated_virus_3B Adeno-associated virus 3B]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3KIE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3KIE FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=D5M:2-DEOXYADENOSINE-5-MONOPHOSPHATE'>D5M</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3kic|3kic]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=D5M:2-DEOXYADENOSINE-5-MONOPHOSPHATE'>D5M</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Cap ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=68742 Adeno-associated virus 3B])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3kie FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kie OCA], [https://pdbe.org/3kie PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3kie RCSB], [https://www.ebi.ac.uk/pdbsum/3kie PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3kie ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3kie FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3kie OCA], [http://pdbe.org/3kie PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3kie RCSB], [http://www.ebi.ac.uk/pdbsum/3kie PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3kie ProSAT]</span></td></tr>
+
</table>
</table>
-
{{Large structure}}
+
== Function ==
 +
[https://www.uniprot.org/uniprot/O56139_9VIRU O56139_9VIRU]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ki/3kie_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ki/3kie_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 31: Line 31:
==See Also==
==See Also==
-
*[[Virus coat protein|Virus coat protein]]
+
*[[Virus coat proteins 3D structures|Virus coat proteins 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Adeno-associated virus 3b]]
+
[[Category: Adeno-associated virus 3B]]
-
[[Category: Chapman, M S]]
+
[[Category: Large Structures]]
-
[[Category: Lerch, T F]]
+
[[Category: Chapman MS]]
-
[[Category: Xie, Q]]
+
[[Category: Lerch TF]]
-
[[Category: Beta barrel]]
+
[[Category: Xie Q]]
-
[[Category: Capsid]]
+
-
[[Category: Dependovirus]]
+
-
[[Category: Icosahedral virus]]
+
-
[[Category: Parvovirus]]
+
-
[[Category: Single-stranded]]
+
-
[[Category: Virus]]
+

Current revision

Crystal structure of adeno-associated virus serotype 3B

PDB ID 3kie

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3kie"
Personal tools