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| ==Open state monomer of a group II chaperonin from methanococcoides burtonii== | | ==Open state monomer of a group II chaperonin from methanococcoides burtonii== |
- | <StructureSection load='3aq1' size='340' side='right' caption='[[3aq1]], [[Resolution|resolution]] 2.75Å' scene=''> | + | <StructureSection load='3aq1' size='340' side='right'caption='[[3aq1]], [[Resolution|resolution]] 2.75Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3aq1]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Metbu Metbu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AQ1 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AQ1 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3aq1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Methanococcoides_burtonii_DSM_6242 Methanococcoides burtonii DSM 6242]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AQ1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AQ1 FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Mbur_1960 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=259564 METBU])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.746Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aq1 OCA], [http://pdbe.org/3aq1 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3aq1 RCSB], [http://www.ebi.ac.uk/pdbsum/3aq1 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3aq1 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aq1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aq1 OCA], [https://pdbe.org/3aq1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aq1 RCSB], [https://www.ebi.ac.uk/pdbsum/3aq1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aq1 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q12UN6_METBU Q12UN6_METBU] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
- | *[[Chaperonin|Chaperonin]] | + | *[[Chaperonin 3D structures|Chaperonin 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Metbu]] | + | [[Category: Large Structures]] |
- | [[Category: Burg, D]] | + | [[Category: Methanococcoides burtonii DSM 6242]] |
- | [[Category: Cavicchioli, R]] | + | [[Category: Burg D]] |
- | [[Category: Curmi, P M]] | + | [[Category: Cavicchioli R]] |
- | [[Category: Francisci, D De]] | + | [[Category: Curmi PM]] |
- | [[Category: Harrop, S J]] | + | [[Category: De Francisci D]] |
- | [[Category: Pilak, O]] | + | [[Category: Harrop SJ]] |
- | [[Category: Siddiqui, K S]] | + | [[Category: Pilak O]] |
- | [[Category: Williams, T J]] | + | [[Category: Siddiqui KS]] |
- | [[Category: Chaperone]]
| + | [[Category: Williams TJ]] |
- | [[Category: Group ii chaperonin]]
| + | |
- | [[Category: Protein folding]]
| + | |
| Structural highlights
Function
Q12UN6_METBU
Publication Abstract from PubMed
Archaea are abundant in permanently cold environments. The Antarctic methanogen, Methanococcoides burtonii, has proven an excellent model for studying molecular mechanisms of cold adaptation. Methanococcoides burtonii contains three group II chaperonins that diverged prior to its closest orthologues from mesophilic Methanosarcina spp. The relative abundance of the three chaperonins shows little dependence on organism growth temperature, except at the highest temperatures, where the most thermally stable chaperonin increases in abundance. In vitro and in vivo, the M. burtonii chaperonins are predominantly monomeric, with only 23-33% oligomeric, thereby differing from other archaea where an oligomeric ring form is dominant. The crystal structure of an N-terminally truncated chaperonin reveals a monomeric protein with a fully open nucleotide binding site. When compared with closed state group II chaperonin structures, a large-scale approximately 30 degrees rotation between the equatorial and intermediate domains is observed resulting in an open nucleotide binding site. This is analogous to the transition observed between open and closed states of group I chaperonins but contrasts with recent archaeal group II chaperonin open state ring structures. The predominance of monomeric form and the ability to adopt a fully open nucleotide site appear to be unique features of the M. burtonii group II chaperonins.
Chaperonins from an Antarctic archaeon are predominantly monomeric: crystal structure of an open state monomer.,Pilak O, Harrop SJ, Siddiqui KS, Chong K, De Francisci D, Burg D, Williams TJ, Cavicchioli R, Curmi PM Environ Microbiol. 2011 Apr 7. doi: 10.1111/j.1462-2920.2011.02477.x. PMID:21477108[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Pilak O, Harrop SJ, Siddiqui KS, Chong K, De Francisci D, Burg D, Williams TJ, Cavicchioli R, Curmi PM. Chaperonins from an Antarctic archaeon are predominantly monomeric: crystal structure of an open state monomer. Environ Microbiol. 2011 Apr 7. doi: 10.1111/j.1462-2920.2011.02477.x. PMID:21477108 doi:10.1111/j.1462-2920.2011.02477.x
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