|
|
| (One intermediate revision not shown.) |
| Line 1: |
Line 1: |
| | | | |
| | ==CcmL from Thermosynechococcus elongatus BP-1== | | ==CcmL from Thermosynechococcus elongatus BP-1== |
| - | <StructureSection load='4n8f' size='340' side='right' caption='[[4n8f]], [[Resolution|resolution]] 2.00Å' scene=''> | + | <StructureSection load='4n8f' size='340' side='right'caption='[[4n8f]], [[Resolution|resolution]] 2.00Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4n8f]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Theeb Theeb]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N8F OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N8F FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4n8f]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermosynechococcus_vestitus_BP-1 Thermosynechococcus vestitus BP-1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N8F FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4n8x|4n8x]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ccmL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=197221 THEEB])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n8f OCA], [https://pdbe.org/4n8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n8f RCSB], [https://www.ebi.ac.uk/pdbsum/4n8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n8f ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n8f OCA], [http://pdbe.org/4n8f PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4n8f RCSB], [http://www.ebi.ac.uk/pdbsum/4n8f PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4n8f ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/CCML_THEVB CCML_THEVB] Probably forms vertices in the carboxysome, a polyhedral inclusion where RuBisCO (ribulose bisphosphate carboxylase, rbcL-rbcS) is sequestered. Has been modeled to induce curvature upon insertion into an otherwise flat hexagonal molecular layer of CcmK subunits.[UniProtKB:P72759][HAMAP-Rule:MF_00858] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 22: |
Line 23: |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Theeb]] | + | [[Category: Large Structures]] |
| - | [[Category: Demers, R J]] | + | [[Category: Thermosynechococcus vestitus BP-1]] |
| - | [[Category: Kimber, M S]] | + | [[Category: Demers RJ]] |
| - | [[Category: Bacterial microcompartment vertex protein]] | + | [[Category: Kimber MS]] |
| - | [[Category: Carboxysome]]
| + | |
| - | [[Category: Ccml]]
| + | |
| - | [[Category: Stranded beta barrel]]
| + | |
| - | [[Category: Structural protein]]
| + | |
| Structural highlights
Function
CCML_THEVB Probably forms vertices in the carboxysome, a polyhedral inclusion where RuBisCO (ribulose bisphosphate carboxylase, rbcL-rbcS) is sequestered. Has been modeled to induce curvature upon insertion into an otherwise flat hexagonal molecular layer of CcmK subunits.[UniProtKB:P72759][HAMAP-Rule:MF_00858]
Publication Abstract from PubMed
CcmL is a small, pentameric protein that is argued to fill the vertices of beta-carboxysomal shell. Here we report the structures of two CcmL orthologs, those from Nostoc sp. PCC 7120 and Thermosynechococcus elongatus BP-1. These structures broadly resemble those previously reported for other strains. However, the Nostoc CcmL structure shows an interesting pattern of behavior where two loops that map to the base of the pentamer adopt either an out or in conformation, with a consistent (over six pentamers) out-in-out-in-in pattern of protomers. The pentamers in this structure are also consistently organized into a back-to-back decamer, though evidence suggests that this is likely not present in solution. Forster resonance energy transfer experiments were able to show a weak interaction between CcmL and CcmK2 when CcmK2 was present at >100 muM. Since CcmK2 forms defined bodies with approximately 200 nm diameter at this concentration, this would support the idea that CcmL can only interact with CcmK2 at rare defect points in the growing shell.
Interactions and structural variability of beta-carboxysomal shell protein CcmL.,Keeling TJ, Samborska B, Demers RW, Kimber MS Photosynth Res. 2014 Feb 7. PMID:24504539[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Keeling TJ, Samborska B, Demers RW, Kimber MS. Interactions and structural variability of beta-carboxysomal shell protein CcmL. Photosynth Res. 2014 Feb 7. PMID:24504539 doi:http://dx.doi.org/10.1007/s11120-014-9973-z
|
