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| | ==Crystal structure of Staphylococcal Superantigen-Like protein 4== | | ==Crystal structure of Staphylococcal Superantigen-Like protein 4== |
| - | <StructureSection load='4dxf' size='340' side='right' caption='[[4dxf]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='4dxf' size='340' side='right'caption='[[4dxf]], [[Resolution|resolution]] 1.70Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4dxf]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Staae Staae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DXF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4DXF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4dxf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Staphylococcus_aureus_subsp._aureus_str._Newman Staphylococcus aureus subsp. aureus str. Newman]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4DXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4DXF FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4dxg|4dxg]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">NWMN_0391, ssl4nm ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=426430 STAAE])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4dxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dxf OCA], [https://pdbe.org/4dxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4dxf RCSB], [https://www.ebi.ac.uk/pdbsum/4dxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4dxf ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4dxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4dxf OCA], [http://pdbe.org/4dxf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4dxf RCSB], [http://www.ebi.ac.uk/pdbsum/4dxf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4dxf ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/SSL4_STAAE SSL4_STAAE] Secreted protein that plays a role in immune innate response inhibition by interfering with host TLR2-mediated pathway.[UniProtKB:Q2G1S8] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Staae]] | + | [[Category: Large Structures]] |
| - | [[Category: Baker, E N]] | + | [[Category: Staphylococcus aureus subsp. aureus str. Newman]] |
| - | [[Category: Baker, H M]] | + | [[Category: Baker EN]] |
| - | [[Category: Fraser, J F]] | + | [[Category: Baker HM]] |
| - | [[Category: Hermans, S J]] | + | [[Category: Fraser JF]] |
| - | [[Category: Langley, R J]] | + | [[Category: Hermans SJ]] |
| - | [[Category: Beta grasp fold]] | + | [[Category: Langley RJ]] |
| - | [[Category: Carbohydrate binding]]
| + | |
| - | [[Category: Oligonucleotide/oligosaccharide binding fold]]
| + | |
| - | [[Category: Sugar binding protein]]
| + | |
| - | [[Category: Superantigen fold]]
| + | |
| Structural highlights
Function
SSL4_STAAE Secreted protein that plays a role in immune innate response inhibition by interfering with host TLR2-mediated pathway.[UniProtKB:Q2G1S8]
Publication Abstract from PubMed
Staphylococcus aureus is a prevalent and significant human pathogen. Among the repertoire of virulence factors produced by this bacterium are the 14 Staphylococcal superantigen-like (SSL) proteins. SSL4 is one member of this family and contains a highly conserved carbohydrate binding site also found in SSL2, SSL3, SSL5, SSL6, and SSL11. Recombinant SSL4(t), comprising amino acids 109-309 of SSL4-Newman, is shown to bind and be internalised by human granulocytes and macrophages in a sialic acid (Sia) dependent manner. SSL4(t) can compete with itself for cell binding, indicating that binding is target specific. A 2.5A resolution crystal structure of SSL4(t) complexed with sialyl Lewis-X (sLe(x) - Neu5Acalpha2-3Galbeta1-4(Fucalpha1-3)GlcNAc) revealed a similar binding site to SSL5 and SSL11. These data, along with data on SSL4(t) binding to a glycan array and biosensor analysis of sLe(x) and sLacNac binding are compared with SSL11. Although these proteins show great similarity in their carbohydrate binding sites with a root mean square (rms) difference between main chain atom positions of only 0.34A, these proteins differ in detail in their affinity for sLe(x) and sLacNac, as well as their glycan preference. Together with cell binding data this shows how S. aureus produces multiple related proteins that target myeloid cells through specific sialyllactosamine containing glycoproteins.
The Structural and Functional Properties of Staphylococcal Superantigen-Like 4 (SSL4).,Hermans SJ, Baker HM, Sequeira RP, Langley RJ, Baker EN, Fraser JD Infect Immun. 2012 Sep 4. PMID:22949551[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Hermans SJ, Baker HM, Sequeira RP, Langley RJ, Baker EN, Fraser JD. The Structural and Functional Properties of Staphylococcal Superantigen-Like 4 (SSL4). Infect Immun. 2012 Sep 4. PMID:22949551 doi:http://dx.doi.org/10.1128/IAI.00764-12
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