4idf

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:14, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Structure of the Fragaria x ananassa enone oxidoreductase in complex with NADPH and HMF==
==Structure of the Fragaria x ananassa enone oxidoreductase in complex with NADPH and HMF==
-
<StructureSection load='4idf' size='340' side='right' caption='[[4idf]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
+
<StructureSection load='4idf' size='340' side='right'caption='[[4idf]], [[Resolution|resolution]] 1.55&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4idf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/European_strawberry European strawberry]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IDF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4IDF FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4idf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Fragaria_vesca Fragaria vesca]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4IDF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4IDF FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=4XX:4-HYDROXY-5-METHYLFURAN-3(2H)-ONE'>4XX</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4ida|4ida]], [[4idb|4idb]], [[4idc|4idc]], [[4idd|4idd]], [[4ide|4ide]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4XX:4-HYDROXY-5-METHYLFURAN-3(2H)-ONE'>4XX</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=NDP:NADPH+DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE+PHOSPHATE'>NDP</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gene28406 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=57918 European strawberry])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4idf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4idf OCA], [https://pdbe.org/4idf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4idf RCSB], [https://www.ebi.ac.uk/pdbsum/4idf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4idf ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4idf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4idf OCA], [http://pdbe.org/4idf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4idf RCSB], [http://www.ebi.ac.uk/pdbsum/4idf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4idf ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ENOX_FRAVE ENOX_FRAVE] Enone oxidoreductase involved in the biosynthesis of 4-hydroxy-2,5-dimethyl-3(2H)-furanone (HDMF or furaneol), the key flavor compound in strawberries.[UniProtKB:Q84V25]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: European strawberry]]
+
[[Category: Fragaria vesca]]
-
[[Category: Schiefner, A]]
+
[[Category: Large Structures]]
-
[[Category: Skerra, A]]
+
[[Category: Schiefner A]]
-
[[Category: Enone oxidoreductase]]
+
[[Category: Skerra A]]
-
[[Category: Furaneol]]
+
-
[[Category: Hmf]]
+
-
[[Category: Hydride transfer]]
+
-
[[Category: Medium chain dehydrogenase/reductase family]]
+
-
[[Category: Nadh]]
+
-
[[Category: Nadph]]
+
-
[[Category: Norfuraneol]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Rossmann fold]]
+
-
[[Category: Zinc-independent]]
+

Current revision

Structure of the Fragaria x ananassa enone oxidoreductase in complex with NADPH and HMF

PDB ID 4idf

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools