This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3vmw

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:27, 8 November 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate==
==Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate==
-
<StructureSection load='3vmw' size='340' side='right' caption='[[3vmw]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3vmw' size='340' side='right'caption='[[3vmw]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacillus_sp._n16-5 Bacillus sp. n16-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VMW FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3vmw]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_sp._N16-5 Bacillus sp. N16-5]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VMW OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VMW FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene>, <scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3vmv|3vmv]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ADA:ALPHA-D-GALACTOPYRANURONIC+ACID'>ADA</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GU088530, pelA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=122631 Bacillus sp. N16-5])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [https://pdbe.org/3vmw PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [https://www.ebi.ac.uk/pdbsum/3vmw PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmw ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Pectate_lyase Pectate lyase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.2.2.2 4.2.2.2] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vmw FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vmw OCA], [http://pdbe.org/3vmw PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vmw RCSB], [http://www.ebi.ac.uk/pdbsum/3vmw PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vmw ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/D0VP31_9BACI D0VP31_9BACI]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 23: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacillus sp. n16-5]]
+
[[Category: Bacillus sp. N16-5]]
-
[[Category: Pectate lyase]]
+
[[Category: Large Structures]]
-
[[Category: Guo, R T]]
+
[[Category: Guo RT]]
-
[[Category: Huang, C H]]
+
[[Category: Huang CH]]
-
[[Category: Ko, T P]]
+
[[Category: Ko TP]]
-
[[Category: Liu, W]]
+
[[Category: Liu W]]
-
[[Category: Ma, Y]]
+
[[Category: Ma Y]]
-
[[Category: Xue, Y]]
+
[[Category: Xue Y]]
-
[[Category: Zhang, G]]
+
[[Category: Zhang G]]
-
[[Category: Zheng, Y]]
+
[[Category: Zheng Y]]
-
[[Category: Zhou, C]]
+
[[Category: Zhou C]]
-
[[Category: Beta-helix]]
+
-
[[Category: Lyase]]
+
-
[[Category: Pectolytic]]
+
-
[[Category: Polygalacturonate]]
+
-
[[Category: Polysaccharide lyase family 1]]
+

Current revision

Crystal structure of pectate lyase Bsp165PelA from Bacillus sp. N165 in complex with trigalacturonate

PDB ID 3vmw

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3vmw"
Personal tools