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| | ==Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b== | | ==Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b== |
| - | <StructureSection load='3aq3' size='340' side='right' caption='[[3aq3]], [[Resolution|resolution]] 2.10Å' scene=''> | + | <StructureSection load='3aq3' size='340' side='right'caption='[[3aq3]], [[Resolution|resolution]] 2.10Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3aq3]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"achromobacter_radiobacter"_(beijerinck_and_van_delden_1902)_bergey_et_al._1934 "achromobacter radiobacter" (beijerinck and van delden 1902) bergey et al. 1934]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AQ3 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AQ3 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3aq3]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Agrobacterium_tumefaciens Agrobacterium tumefaciens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AQ3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AQ3 FirstGlance]. <br> |
| - | </td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3aq2|3aq2]], [[3aq4|3aq4]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">A6b ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=358 "Achromobacter radiobacter" (Beijerinck and van Delden 1902) Bergey et al. 1934])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aq3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aq3 OCA], [https://pdbe.org/3aq3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aq3 RCSB], [https://www.ebi.ac.uk/pdbsum/3aq3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aq3 ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aq3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aq3 OCA], [http://pdbe.org/3aq3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3aq3 RCSB], [http://www.ebi.ac.uk/pdbsum/3aq3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3aq3 ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q57530_RHIRD Q57530_RHIRD] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Wang, M M]] | + | [[Category: Agrobacterium tumefaciens]] |
| - | [[Category: Yuan, Y A]] | + | [[Category: Large Structures]] |
| - | [[Category: Adp-ribosylation]] | + | [[Category: Wang MM]] |
| - | [[Category: Agrobacterium 6b]] | + | [[Category: Yuan YA]] |
| - | [[Category: Mirna machinery]]
| + | |
| - | [[Category: Toxin]]
| + | |
| Structural highlights
Function
Q57530_RHIRD
Publication Abstract from PubMed
The Agrobacterium Ti plasmid (T-DNA) 6b proteins interact with many different host proteins implicated in plant cell proliferation. Here, we show that Arabidopsis plants overexpressing 6b display microRNA (miRNA) deficiency by directly targeting SERRATE and AGO1 via a specific loop fragment (residues 40-55). In addition, we report the crystal structures of Agrobacterium tumefaciens AK6b at 2.1 A, Agrobacterium vitis AB6b at 1.65 A, and Arabidopsis ADP ribosylation factor (ARF) at 1.8 A. The 6b structure adopts an ADP-ribosylating toxin fold closely related to cholera toxin. In vitro ADP ribosylation analysis demonstrates that 6b represents a new toxin family, with Tyr 66, Thr 93, and Tyr 153 as the ADP ribosylation catalytic residues in the presence of Arabidopsis ARF and GTP. Our work provides molecular insights, suggesting that 6b regulates plant cell growth by the disturbance of the miRNA pathway through its ADP ribosylation activity.
Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b.,Wang M, Soyano T, Machida S, Yang JY, Jung C, Chua NH, Yuan YA Genes Dev. 2011 Jan 1;25(1):64-76. Epub 2010 Dec 14. PMID:21156810[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Wang M, Soyano T, Machida S, Yang JY, Jung C, Chua NH, Yuan YA. Molecular insights into plant cell proliferation disturbance by Agrobacterium protein 6b. Genes Dev. 2011 Jan 1;25(1):64-76. Epub 2010 Dec 14. PMID:21156810 doi:10.1101/gad.1985511
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