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| | ==Structure of the fimbrial protein FimP from Actonomyces oris== | | ==Structure of the fimbrial protein FimP from Actonomyces oris== |
| - | <StructureSection load='3uxf' size='340' side='right' caption='[[3uxf]], [[Resolution|resolution]] 1.60Å' scene=''> | + | <StructureSection load='3uxf' size='340' side='right'caption='[[3uxf]], [[Resolution|resolution]] 1.60Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3uxf]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_27044 Atcc 27044]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UXF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3UXF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3uxf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Actinomyces_oris Actinomyces oris]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3UXF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3UXF FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.603Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FimP ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=544580 ATCC 27044])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3uxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3uxf OCA], [http://pdbe.org/3uxf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3uxf RCSB], [http://www.ebi.ac.uk/pdbsum/3uxf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3uxf ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3uxf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3uxf OCA], [https://pdbe.org/3uxf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3uxf RCSB], [https://www.ebi.ac.uk/pdbsum/3uxf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3uxf ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/FM1_ACTVI FM1_ACTVI] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 27044]] | + | [[Category: Actinomyces oris]] |
| - | [[Category: Persson, K]] | + | [[Category: Large Structures]] |
| - | [[Category: Adhesin]] | + | [[Category: Persson K]] |
| - | [[Category: Bacterial surface]]
| + | |
| - | [[Category: Beta sandwich]]
| + | |
| - | [[Category: Cell adhesion]]
| + | |
| - | [[Category: Fimbria]]
| + | |
| - | [[Category: Gram-positive]]
| + | |
| - | [[Category: Isopeptide]]
| + | |
| Structural highlights
Function
FM1_ACTVI
Publication Abstract from PubMed
The Actinomyces oris type-1 pili are important for the initial formation of dental plaque by binding to salivary proteins that adhere to the tooth surface. Here we present the X-ray structure of FimP, the protein that is polymerized into the type-1 pilus stalk, assisted by a pili-specific sortase. FimP consists of three tandem IgG-like domains. The middle and C-terminal domains contain one autocatalyzed intramolecular isopeptide bond each, a feature used by Gram-positive bacteria for stabilization of surface proteins. While the N-terminal domain harbours all the residues necessary for forming an isopeptide bond, no such bond is observed in the crystal structure of this unpolymerized form of FimP. The monomer is further stabilized by one disulfide bond each in the N- and C-terminal domains as well as by a metal-coordinated loop protruding from the C-terminal domain. A lysine, predicted to be crucial for FimP polymerization by covalent attachment to a threonine from another subunit, is located at the rim of a groove lined with conserved residues. The groove may function as a docking site for the sortase-FimP complex. We also present sequence analyses performed on the genes encoding FimP as well as the related FimA, obtained from clinical isolates.
The Pilin Protein FimP from Actinomyces oris: Crystal Structure and Sequence Analyses.,Persson K, Esberg A, Claesson R, Stromberg N PLoS One. 2012;7(10):e48364. doi: 10.1371/journal.pone.0048364. Epub 2012 Oct 31. PMID:23118994[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Persson K, Esberg A, Claesson R, Stromberg N. The Pilin Protein FimP from Actinomyces oris: Crystal Structure and Sequence Analyses. PLoS One. 2012;7(10):e48364. doi: 10.1371/journal.pone.0048364. Epub 2012 Oct 31. PMID:23118994 doi:http://dx.doi.org/10.1371/journal.pone.0048364
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