3ewm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:25, 28 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of an uncharacterized sugar kinase PH1459 from pyrococcus horikoshii==
==Crystal structure of an uncharacterized sugar kinase PH1459 from pyrococcus horikoshii==
-
<StructureSection load='3ewm' size='340' side='right' caption='[[3ewm]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
+
<StructureSection load='3ewm' size='340' side='right'caption='[[3ewm]], [[Resolution|resolution]] 1.90&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3ewm]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/'pyrococcus_shinkaii' 'pyrococcus shinkaii']. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EWM OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EWM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3ewm]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_horikoshii Pyrococcus horikoshii]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EWM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EWM FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.9&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PH1459, PHCC008 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=53953 'Pyrococcus shinkaii'])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ewm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ewm OCA], [http://pdbe.org/3ewm PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3ewm RCSB], [http://www.ebi.ac.uk/pdbsum/3ewm PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3ewm ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3ewm TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3ewm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3ewm OCA], [https://pdbe.org/3ewm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3ewm RCSB], [https://www.ebi.ac.uk/pdbsum/3ewm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3ewm ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3ewm TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Y1459_PYRHO Y1459_PYRHO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ew/3ewm_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ew/3ewm_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Pyrococcus shinkaii]]
+
[[Category: Large Structures]]
-
[[Category: Burley, S K]]
+
[[Category: Pyrococcus horikoshii]]
-
[[Category: Eswaramoorthy, S]]
+
[[Category: Burley SK]]
-
[[Category: Kumar, G]]
+
[[Category: Eswaramoorthy S]]
-
[[Category: Structural genomic]]
+
[[Category: Kumar G]]
-
[[Category: Swaminathan, S]]
+
[[Category: Swaminathan S]]
-
[[Category: Carbohydrate kinase]]
+
-
[[Category: Kinase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: Pfkb family]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of an uncharacterized sugar kinase PH1459 from pyrococcus horikoshii

PDB ID 3ewm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools