This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3exz

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (00:26, 28 December 2023) (edit) (undo)
 
(One intermediate revision not shown.)
Line 1: Line 1:
==Crystal structure of the MaoC-like dehydratase from Rhodospirillum rubrum. Northeast Structural Genomics Consortium target RrR103a.==
==Crystal structure of the MaoC-like dehydratase from Rhodospirillum rubrum. Northeast Structural Genomics Consortium target RrR103a.==
-
<StructureSection load='3exz' size='340' side='right' caption='[[3exz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
+
<StructureSection load='3exz' size='340' side='right'caption='[[3exz]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3exz]] is a 5 chain structure with sequence from [http://en.wikipedia.org/wiki/Rhort Rhort]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXZ OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3EXZ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3exz]] is a 5 chain structure with sequence from [https://en.wikipedia.org/wiki/Rhodospirillum_rubrum_ATCC_11170 Rhodospirillum rubrum ATCC 11170]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3EXZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3EXZ FirstGlance]. <br>
-
</td></tr><tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Rru_A2194 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=269796 RHORT])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MSE:SELENOMETHIONINE'>MSE</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3exz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exz OCA], [http://pdbe.org/3exz PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3exz RCSB], [http://www.ebi.ac.uk/pdbsum/3exz PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3exz ProSAT], [http://www.topsan.org/Proteins/NESGC/3exz TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3exz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3exz OCA], [https://pdbe.org/3exz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3exz RCSB], [https://www.ebi.ac.uk/pdbsum/3exz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3exz ProSAT], [https://www.topsan.org/Proteins/NESGC/3exz TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q2RSA1_RHORT Q2RSA1_RHORT]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exz_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/ex/3exz_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Rhort]]
+
[[Category: Large Structures]]
-
[[Category: Acton, T B]]
+
[[Category: Rhodospirillum rubrum ATCC 11170]]
-
[[Category: Ciccosanti, C]]
+
[[Category: Acton TB]]
-
[[Category: Foote, E L]]
+
[[Category: Ciccosanti C]]
-
[[Category: Hunt, J F]]
+
[[Category: Foote EL]]
-
[[Category: Janjua, H]]
+
[[Category: Hunt JF]]
-
[[Category: Montelione, G T]]
+
[[Category: Janjua H]]
-
[[Category: Structural genomic]]
+
[[Category: Montelione GT]]
-
[[Category: Seetharaman, J]]
+
[[Category: Seetharaman J]]
-
[[Category: Su, M]]
+
[[Category: Su M]]
-
[[Category: Tong, L]]
+
[[Category: Tong L]]
-
[[Category: Vorobiev, S M]]
+
[[Category: Vorobiev SM]]
-
[[Category: Wang, H]]
+
[[Category: Wang H]]
-
[[Category: Xiao, R]]
+
[[Category: Xiao R]]
-
[[Category: Lyase]]
+
-
[[Category: Maoc-like dehydratase]]
+
-
[[Category: Nesg]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Q2rsa1_rhort]]
+
-
[[Category: Rrr103a]]
+

Current revision

Crystal structure of the MaoC-like dehydratase from Rhodospirillum rubrum. Northeast Structural Genomics Consortium target RrR103a.

PDB ID 3exz

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools