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| | ==Crystal structure of hemolymph type prophenoloxidase (proPOb) from crustacean== | | ==Crystal structure of hemolymph type prophenoloxidase (proPOb) from crustacean== |
| - | <StructureSection load='3wky' size='340' side='right' caption='[[3wky]], [[Resolution|resolution]] 1.80Å' scene=''> | + | <StructureSection load='3wky' size='340' side='right'caption='[[3wky]], [[Resolution|resolution]] 1.80Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3wky]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Marsupenaeus_japonicus Marsupenaeus japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WKY OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WKY FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3wky]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Penaeus_japonicus Penaeus japonicus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WKY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WKY FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CUO:CU2-O2+CLUSTER'>CUO</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.801Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wky FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wky OCA], [http://pdbe.org/3wky PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wky RCSB], [http://www.ebi.ac.uk/pdbsum/3wky PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wky ProSAT]</span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=CUO:CU2-O2+CLUSTER'>CUO</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=NA:SODIUM+ION'>NA</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
| | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wky FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wky OCA], [https://pdbe.org/3wky PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wky RCSB], [https://www.ebi.ac.uk/pdbsum/3wky PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wky ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/G5EKM4_PENJP G5EKM4_PENJP] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Marsupenaeus japonicus]] | + | [[Category: Large Structures]] |
| - | [[Category: Masuda, T]] | + | [[Category: Penaeus japonicus]] |
| - | [[Category: Mikami, B]] | + | [[Category: Masuda T]] |
| - | [[Category: Hydroxydation]] | + | [[Category: Mikami B]] |
| - | [[Category: Monophenol]]
| + | |
| - | [[Category: O-diphenol]]
| + | |
| - | [[Category: Oxidation]]
| + | |
| - | [[Category: Oxidoreductase activator]]
| + | |
| - | [[Category: Phenoloxidase]]
| + | |
| - | [[Category: Plasma]]
| + | |
| - | [[Category: Type 3 copper protein]]
| + | |
| - | [[Category: Tyrosinase]]
| + | |
| Structural highlights
3wky is a 2 chain structure with sequence from Penaeus japonicus. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
| | Method: | X-ray diffraction, Resolution 1.801Å |
| Ligands: | , , , , , |
| Resources: | FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT |
Function
G5EKM4_PENJP
Publication Abstract from PubMed
Phenoloxidase (PO), which is classified as a type 3 copper protein, catalyzes the hydroxylation of monophenol to o-diphenol and subsequent oxidation to the corresponding o-quinone. The geometry and coordination environment of the active site of the arthropod PO is very similar to that of the arthropod hemocyanin (Hc). However, unlike the POs, Hc is an oxygen carrier in crustaceans, and does not possess the PO activity in general. Recently, we identified a new type of proPO from a crustacean and designated it as proPObeta. This enzyme has many characteristics rather similar to Hc, such as its maturation, localization and oligomeric state. Here, we determined the crystal structure of proPObeta prepared from the hemolymph of kuruma prawns (Marsupenaeus japonicus) at 1.8 A resolution. M. japonicus proPObeta forms a homo-hexamer rather similar to arthropod Hc. The geometry of the active copper site in proPObeta was nearly identical to that of arthropod Hc. Furthermore, the well characterized 'place holder' phenylalanine was observed (Phe72). However, the accessibility to the active site differed in several ways. First, another phenylalanine residue which shields the active site by interacting with a copper-coordinated histidine in crustacean Hc was substituted by valine in proPObeta structure. Second, two tyrosine residues, Tyr208 and Tyr209, both of which are absent in Hc, show the alternative conformations and form a pathway accessible to the reaction center. Thus, the present crystal structure clarified the similarities and differences in the activity of two closely related proteins, PO and Hc. This article is protected by copyright. All rights reserved. STRUCTURED DIGITAL ABSTRACT: proPObeta and proPObeta bind by x-ray crystallography (View interaction).
Crystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins.,Masuda T, Momoji K, Hirata T, Mikami B FEBS J. 2014 Apr 10. doi: 10.1111/febs.12812. PMID:24720693[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Masuda T, Momoji K, Hirata T, Mikami B. Crystal structure of a crustacean prophenoloxidase provides a clue to understanding the functionality of the type 3 copper proteins. FEBS J. 2014 Apr 10. doi: 10.1111/febs.12812. PMID:24720693 doi:http://dx.doi.org/10.1111/febs.12812
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