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| ==Crystal structure of the lamprey variable lymphocyte receptor C== | | ==Crystal structure of the lamprey variable lymphocyte receptor C== |
- | <StructureSection load='3wo9' size='340' side='right' caption='[[3wo9]], [[Resolution|resolution]] 2.30Å' scene=''> | + | <StructureSection load='3wo9' size='340' side='right'caption='[[3wo9]], [[Resolution|resolution]] 2.30Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3wo9]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Arctic_lamprey Arctic lamprey]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WO9 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3WO9 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3wo9]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Lethenteron_camtschaticum Lethenteron camtschaticum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3WO9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3WO9 FirstGlance]. <br> |
- | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">VLRC ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=980415 Arctic lamprey])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3Å</td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3wo9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wo9 OCA], [http://pdbe.org/3wo9 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3wo9 RCSB], [http://www.ebi.ac.uk/pdbsum/3wo9 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3wo9 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3wo9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3wo9 OCA], [https://pdbe.org/3wo9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3wo9 RCSB], [https://www.ebi.ac.uk/pdbsum/3wo9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3wo9 ProSAT]</span></td></tr> |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/E0D2V6_LETCA E0D2V6_LETCA] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
- | *[[Variable lymphocyte receptor|Variable lymphocyte receptor]] | + | *[[Variable lymphocyte receptor 3D structures|Variable lymphocyte receptor 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Arctic lamprey]] | + | [[Category: Large Structures]] |
- | [[Category: Kanda, R]] | + | [[Category: Lethenteron camtschaticum]] |
- | [[Category: Kasahara, M]] | + | [[Category: Kanda R]] |
- | [[Category: Kasamatsu, J]] | + | [[Category: Kasahara M]] |
- | [[Category: Maenaka, K]] | + | [[Category: Kasamatsu J]] |
- | [[Category: Ose, T]] | + | [[Category: Maenaka K]] |
- | [[Category: Sutoh, Y]] | + | [[Category: Ose T]] |
- | [[Category: Immune system]]
| + | [[Category: Sutoh Y]] |
- | [[Category: Immunological receptor]]
| + | |
- | [[Category: Leucine rich repeat]]
| + | |
- | [[Category: Membrane]]
| + | |
| Structural highlights
Function
E0D2V6_LETCA
Publication Abstract from PubMed
Jawless vertebrates represented by lampreys and hagfish use variable lymphocyte receptors (VLRs) as antigen receptors to mount adaptive immune responses. VLRs generate diversity that is comparable to immunoglobulins and T-cell receptors by a gene conversion-like mechanism, which is mediated by cytosine deaminases. Currently, three types of VLRs, VLRA, VLRB, and VLRC, have been identified in lampreys. Crystal structures of VLRA and VLRB in complex with antigens have been reported recently, but no structural information is available for VLRC. Here, we present the first crystal structure of VLRC from the Japanese lamprey (Lethenteron japonicum). Similar to VLRA and VLRB, VLRC forms a typical horseshoe-like solenoid structure with a variable concave surface. Strikingly, its N-terminal cap has a long loop with limited sequence variability that protrudes toward the concave surface, which is the putative antigen-binding surface. Furthermore, as predicted previously, its C-terminal cap lacks a highly variable protruding loop that plays an important role in antigen recognition by lamprey VLRA and VLRB. Recent work suggests that VLRC+ lymphocytes in jawless vertebrates might be akin to gammadelta T cells in jawed vertebrates. Structural features of lamprey VLRC described here suggest that it may recognize antigens in a unique manner.
Crystal structure of the lamprey variable lymphocyte receptor C reveals an unusual feature in its N-terminal capping module.,Kanda R, Sutoh Y, Kasamatsu J, Maenaka K, Kasahara M, Ose T PLoS One. 2014 Jan 23;9(1):e85875. doi: 10.1371/journal.pone.0085875. eCollection, 2014. PMID:24465760[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Kanda R, Sutoh Y, Kasamatsu J, Maenaka K, Kasahara M, Ose T. Crystal structure of the lamprey variable lymphocyte receptor C reveals an unusual feature in its N-terminal capping module. PLoS One. 2014 Jan 23;9(1):e85875. doi: 10.1371/journal.pone.0085875. eCollection, 2014. PMID:24465760 doi:http://dx.doi.org/10.1371/journal.pone.0085875
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