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| ==Crystal structure of an insect chitinase from the Asian corn borer, Ostrinia furnacalis== | | ==Crystal structure of an insect chitinase from the Asian corn borer, Ostrinia furnacalis== |
- | <StructureSection load='3w4r' size='340' side='right' caption='[[3w4r]], [[Resolution|resolution]] 1.70Å' scene=''> | + | <StructureSection load='3w4r' size='340' side='right'caption='[[3w4r]], [[Resolution|resolution]] 1.70Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[3w4r]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Ostrinia_furnacalis Ostrinia furnacalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W4R OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3W4R FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3w4r]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Ostrinia_furnacalis Ostrinia furnacalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3W4R OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3W4R FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7Å</td></tr> |
- | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1guv|1guv]], [[3fxy|3fxy]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Chitinase Chitinase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.14 3.2.1.14] </span></td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3w4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w4r OCA], [https://pdbe.org/3w4r PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3w4r RCSB], [https://www.ebi.ac.uk/pdbsum/3w4r PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3w4r ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3w4r FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3w4r OCA], [http://pdbe.org/3w4r PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3w4r RCSB], [http://www.ebi.ac.uk/pdbsum/3w4r PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3w4r ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Q2V6H4_OSTFU Q2V6H4_OSTFU] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| ==See Also== | | ==See Also== |
- | *[[Chitinase|Chitinase]] | + | *[[Chitinase 3D structures|Chitinase 3D structures]] |
| == References == | | == References == |
| <references/> | | <references/> |
| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Chitinase]] | + | [[Category: Large Structures]] |
| [[Category: Ostrinia furnacalis]] | | [[Category: Ostrinia furnacalis]] |
- | [[Category: Chen, L]] | + | [[Category: Chen L]] |
- | [[Category: Liu, T]] | + | [[Category: Liu T]] |
- | [[Category: Shen, X]] | + | [[Category: Shen X]] |
- | [[Category: Yang, Q]] | + | [[Category: Yang Q]] |
- | [[Category: Zhou, Y]] | + | [[Category: Zhou Y]] |
- | [[Category: Chitin]]
| + | |
- | [[Category: Glycosyl hydrolase]]
| + | |
- | [[Category: Hydrolase]]
| + | |
- | [[Category: Insect]]
| + | |
| Structural highlights
Function
Q2V6H4_OSTFU
Publication Abstract from PubMed
Insects possess a greater number of chitinases than any other organisms. This work is the first report of unliganded and oligosaccharide-complexed crystal structures of the insect chitinase OfChtI from Ostrinia furnacalis, which is essential to moulting. The obtained crystal structures were solved at resolutions between 1.7 and 2.2 A. A structural comparison with other chitinases revealed that OfChtI contains a long substrate-binding cleft similar to the bacterial chitinase SmChiB from Serratia marcescens. However, unlike the exo-acting SmChiB, which has a blocked and tunnel-like cleft, OfChtI possesses an open and groove-like cleft. The complexed structure of the catalytic domain of OfChtI (OfChtI-CAD) with (GlcNAc)2/3 indicates that the reducing sugar at subsite -1 is in an energetically unfavoured `boat' conformation, a state that possibly exists just before the completion of catalysis. Because OfChtI is known to act from nonreducing ends, (GlcNAc)3 would be a hydrolysis product of (GlcNAc)6, suggesting that OfChtI possesses an endo enzymatic activity. Furthermore, a hydrophobic plane composed of four surface-exposed aromatic residues is adjacent to the entrance to the substrate-binding cleft. Mutations of these residues greatly impair the chitin-binding activity, indicating that this hydrophobic plane endows OfChtI-CAD with the ability to anchor chitin. This work reveals the unique structural characteristics of an insect chitinase.
Structural characteristics of an insect group I chitinase, an enzyme indispensable to moulting.,Chen L, Liu T, Zhou Y, Chen Q, Shen X, Yang Q Acta Crystallogr D Biol Crystallogr. 2014 Apr 1;70(Pt 4):932-42. doi:, 10.1107/S1399004713033841. Epub 2014 Mar 19. PMID:24699639[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Chen L, Liu T, Zhou Y, Chen Q, Shen X, Yang Q. Structural characteristics of an insect group I chitinase, an enzyme indispensable to moulting. Acta Crystallogr D Biol Crystallogr. 2014 Apr 1;70(Pt 4):932-42. doi:, 10.1107/S1399004713033841. Epub 2014 Mar 19. PMID:24699639 doi:http://dx.doi.org/10.1107/S1399004713033841
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