This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3a9h

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:16, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal Structure of PQQ-dependent sugar dehydrogenase holo-form==
==Crystal Structure of PQQ-dependent sugar dehydrogenase holo-form==
-
<StructureSection load='3a9h' size='340' side='right' caption='[[3a9h]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
+
<StructureSection load='3a9h' size='340' side='right'caption='[[3a9h]], [[Resolution|resolution]] 2.50&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3a9h]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_51768 Atcc 51768]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9H OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A9H FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3a9h]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A9H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A9H FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene>, <scene name='pdbligand=TRE:TREHALOSE'>TRE</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3a9g|3a9g]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PQQ:PYRROLOQUINOLINE+QUINONE'>PQQ</scene>, <scene name='pdbligand=PRD_900006:trehalose'>PRD_900006</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Quinoprotein_glucose_dehydrogenase_(PQQ,_quinone) Quinoprotein glucose dehydrogenase (PQQ, quinone)], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=1.1.5.2 1.1.5.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9h OCA], [https://pdbe.org/3a9h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a9h RCSB], [https://www.ebi.ac.uk/pdbsum/3a9h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9h ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a9h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a9h OCA], [http://pdbe.org/3a9h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a9h RCSB], [http://www.ebi.ac.uk/pdbsum/3a9h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a9h ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q8ZUN8_PYRAE Q8ZUN8_PYRAE]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a9h_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a9/3a9h_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 32: Line 33:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 51768]]
+
[[Category: Large Structures]]
-
[[Category: Ohshima, T]]
+
[[Category: Pyrobaculum aerophilum]]
-
[[Category: Sakuraba, H]]
+
[[Category: Ohshima T]]
-
[[Category: Yokono, K]]
+
[[Category: Sakuraba H]]
-
[[Category: Yoneda, K]]
+
[[Category: Yokono K]]
-
[[Category: Aldose sugar dehydrogenase]]
+
[[Category: Yoneda K]]
-
[[Category: Beta-propeller fold]]
+
-
[[Category: Oxidoreductase]]
+
-
[[Category: Pqq dependent dehydrogenase]]
+

Current revision

Crystal Structure of PQQ-dependent sugar dehydrogenase holo-form

PDB ID 3a9h

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3a9h"
Personal tools