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| | ==The structure of Nostoc sp. PCC 7120 CcmL== | | ==The structure of Nostoc sp. PCC 7120 CcmL== |
| - | <StructureSection load='4n8x' size='340' side='right' caption='[[4n8x]], [[Resolution|resolution]] 1.93Å' scene=''> | + | <StructureSection load='4n8x' size='340' side='right'caption='[[4n8x]], [[Resolution|resolution]] 1.93Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[4n8x]] is a 30 chain structure with sequence from [http://en.wikipedia.org/wiki/Anabaena_7120 Anabaena 7120]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N8X OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4N8X FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[4n8x]] is a 30 chain structure with sequence from [https://en.wikipedia.org/wiki/Nostoc_sp._PCC_7120_=_FACHB-418 Nostoc sp. PCC 7120 = FACHB-418]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4N8X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4N8X FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.93Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[4n8f|4n8f]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">ccmL ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=103690 Anabaena 7120])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4n8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n8x OCA], [https://pdbe.org/4n8x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4n8x RCSB], [https://www.ebi.ac.uk/pdbsum/4n8x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4n8x ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4n8x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4n8x OCA], [http://pdbe.org/4n8x PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4n8x RCSB], [http://www.ebi.ac.uk/pdbsum/4n8x PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4n8x ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/CCML_NOSS1 CCML_NOSS1] Probably forms vertices in the carboxysome, a polyhedral inclusion where RuBisCO (ribulose bisphosphate carboxylase, rbcL-rbcS) is sequestered. Has been modeled to induce curvature upon insertion into an otherwise flat hexagonal molecular layer of CcmK subunits.[UniProtKB:P72759][HAMAP-Rule:MF_00858] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Anabaena 7120]] | + | [[Category: Large Structures]] |
| - | [[Category: Keeling, T J]] | + | [[Category: Nostoc sp. PCC 7120 = FACHB-418]] |
| - | [[Category: Kimber, M S]] | + | [[Category: Keeling TJ]] |
| - | [[Category: Bacterial microcompartment vertex protein]] | + | [[Category: Kimber MS]] |
| - | [[Category: Carboxysome]]
| + | |
| - | [[Category: Ccml]]
| + | |
| - | [[Category: Stranded beta barrel]]
| + | |
| - | [[Category: Structural protein]]
| + | |
| Structural highlights
Function
CCML_NOSS1 Probably forms vertices in the carboxysome, a polyhedral inclusion where RuBisCO (ribulose bisphosphate carboxylase, rbcL-rbcS) is sequestered. Has been modeled to induce curvature upon insertion into an otherwise flat hexagonal molecular layer of CcmK subunits.[UniProtKB:P72759][HAMAP-Rule:MF_00858]
Publication Abstract from PubMed
CcmL is a small, pentameric protein that is argued to fill the vertices of beta-carboxysomal shell. Here we report the structures of two CcmL orthologs, those from Nostoc sp. PCC 7120 and Thermosynechococcus elongatus BP-1. These structures broadly resemble those previously reported for other strains. However, the Nostoc CcmL structure shows an interesting pattern of behavior where two loops that map to the base of the pentamer adopt either an out or in conformation, with a consistent (over six pentamers) out-in-out-in-in pattern of protomers. The pentamers in this structure are also consistently organized into a back-to-back decamer, though evidence suggests that this is likely not present in solution. Forster resonance energy transfer experiments were able to show a weak interaction between CcmL and CcmK2 when CcmK2 was present at >100 muM. Since CcmK2 forms defined bodies with approximately 200 nm diameter at this concentration, this would support the idea that CcmL can only interact with CcmK2 at rare defect points in the growing shell.
Interactions and structural variability of beta-carboxysomal shell protein CcmL.,Keeling TJ, Samborska B, Demers RW, Kimber MS Photosynth Res. 2014 Feb 7. PMID:24504539[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Keeling TJ, Samborska B, Demers RW, Kimber MS. Interactions and structural variability of beta-carboxysomal shell protein CcmL. Photosynth Res. 2014 Feb 7. PMID:24504539 doi:http://dx.doi.org/10.1007/s11120-014-9973-z
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