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| | ==crystal structure of Ttb-gly F401S mutant== | | ==crystal structure of Ttb-gly F401S mutant== |
| - | <StructureSection load='3zjk' size='340' side='right' caption='[[3zjk]], [[Resolution|resolution]] 2.20Å' scene=''> | + | <StructureSection load='3zjk' size='340' side='right'caption='[[3zjk]], [[Resolution|resolution]] 2.20Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3zjk]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/"flavobacterium_thermophilum"_yoshida_and_oshima_1971 "flavobacterium thermophilum" yoshida and oshima 1971]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJK OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3ZJK FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3zjk]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermus_thermophilus Thermus thermophilus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3ZJK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3ZJK FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2Å</td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-glucosidase Beta-glucosidase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.21 3.2.1.21] </span></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3zjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjk OCA], [http://pdbe.org/3zjk PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3zjk RCSB], [http://www.ebi.ac.uk/pdbsum/3zjk PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3zjk ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3zjk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3zjk OCA], [https://pdbe.org/3zjk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3zjk RCSB], [https://www.ebi.ac.uk/pdbsum/3zjk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3zjk ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q9RA61_THETH Q9RA61_THETH] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Flavobacterium thermophilum yoshida and oshima 1971]] | + | [[Category: Large Structures]] |
| - | [[Category: Beta-glucosidase]] | + | [[Category: Thermus thermophilus]] |
| - | [[Category: Czjzek, M]] | + | [[Category: Czjzek M]] |
| - | [[Category: Dion, M]] | + | [[Category: Dion M]] |
| - | [[Category: Leroux, C]] | + | [[Category: Leroux C]] |
| - | [[Category: Roncza, J]] | + | [[Category: Roncza J]] |
| - | [[Category: Tellier, C]] | + | [[Category: Tellier C]] |
| - | [[Category: Teze, D]] | + | [[Category: Teze D]] |
| - | [[Category: Tran, V]] | + | [[Category: Tran V]] |
| - | [[Category: Glycoside hydrolase family 1]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Transglycosidase]]
| + | |
| Structural highlights
Function
Q9RA61_THETH
Publication Abstract from PubMed
A large number of retaining glycosidases catalyze both hydrolysis and transglycosylation reactions, but little is known about what determines the balance between these two activities (transglycosylation/hydrolysis ratio). We previously obtained by directed evolution the mutants F401S and N282T of Thermus thermophilus beta-glycosidase (Ttbeta-gly, glycoside hydrolase family 1 (GH1)), which display a higher transglycosylation/hydrolysis ratio than the wild-type enzyme. In order to find the cause of these activity modifications, and thereby set up a generic method for easily obtaining transglycosidases from glycosidases, we determined their X-ray structure. No major structural changes could be observed which could help to rationalize the mutagenesis of glycosidases into transglycosidases. However, as these mutations are highly conserved in GH1 beta-glycosidases and are located around the -1 site, we pursued the isolation of new transglycosidases by targeting highly conserved amino acids located around the active site. Thus, by single-point mutagenesis on Ttbeta-gly, we created four new mutants that exhibit improved synthetic activity, producing disaccharides in yields of 68-90% against only 36% when native Ttbeta-gly was used. As all of the chosen positions were well conserved among GH1 enzymes, this approach is most probably a general route to convert GH1 glycosidases into transglycosidases.
Semi-rational approach for converting a GH1 beta-glycosidase into a beta-transglycosidase.,Teze D, Hendrickx J, Czjzek M, Ropartz D, Sanejouand YH, Tran V, Tellier C, Dion M Protein Eng Des Sel. 2014 Jan;27(1):13-9. doi: 10.1093/protein/gzt057. Epub 2013 , Nov 27. PMID:24287187[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Teze D, Hendrickx J, Czjzek M, Ropartz D, Sanejouand YH, Tran V, Tellier C, Dion M. Semi-rational approach for converting a GH1 beta-glycosidase into a beta-transglycosidase. Protein Eng Des Sel. 2014 Jan;27(1):13-9. doi: 10.1093/protein/gzt057. Epub 2013 , Nov 27. PMID:24287187 doi:http://dx.doi.org/10.1093/protein/gzt057
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