This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2xgi

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:31, 20 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of Barley Beta-Amylase complexed with 3,4- epoxybutyl alpha-D-glucopyranoside==
==Crystal structure of Barley Beta-Amylase complexed with 3,4- epoxybutyl alpha-D-glucopyranoside==
-
<StructureSection load='2xgi' size='340' side='right' caption='[[2xgi]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
+
<StructureSection load='2xgi' size='340' side='right'caption='[[2xgi]], [[Resolution|resolution]] 1.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2xgi]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Hordeum_vulgare Hordeum vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XGI OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2XGI FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2xgi]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Hordeum_vulgare Hordeum vulgare]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XGI OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XGI FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=EBG:2-HYDROXYMETHYL-6-(2-OXIRANYL-ETHOXY)-TETRAHYDRO-PYRAN-3,4,5-TRIOL'>EBG</scene>, <scene name='pdbligand=EBQ:2-[(2R)-OXIRAN-2-YL]ETHYL+ALPHA-D-GLUCOPYRANOSIDE'>EBQ</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.3&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2xg9|2xg9]], [[2xfy|2xfy]], [[2xgb|2xgb]], [[2xff|2xff]], [[1b1y|1b1y]], [[2xfr|2xfr]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EBQ:2-[(2R)-OXIRAN-2-YL]ETHYL+ALPHA-D-GLUCOPYRANOSIDE'>EBQ</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=J5B:(3R)-3-hydroxybutyl+alpha-D-glucopyranoside'>J5B</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Beta-amylase Beta-amylase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.2 3.2.1.2] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xgi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xgi OCA], [https://pdbe.org/2xgi PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xgi RCSB], [https://www.ebi.ac.uk/pdbsum/2xgi PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xgi ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2xgi FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xgi OCA], [http://pdbe.org/2xgi PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2xgi RCSB], [http://www.ebi.ac.uk/pdbsum/2xgi PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2xgi ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/AMYB_HORVU AMYB_HORVU]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 21:
==See Also==
==See Also==
-
*[[Amylase|Amylase]]
+
*[[Amylase 3D structures|Amylase 3D structures]]
-
*[[User:Gabriel Pons/Sandbox 2|User:Gabriel Pons/Sandbox 2]]
+
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Beta-amylase]]
 
[[Category: Hordeum vulgare]]
[[Category: Hordeum vulgare]]
-
[[Category: Denyer, K]]
+
[[Category: Large Structures]]
-
[[Category: Field, R A]]
+
[[Category: Denyer K]]
-
[[Category: Lawson, D M]]
+
[[Category: Field RA]]
-
[[Category: Naldrett, M J]]
+
[[Category: Lawson DM]]
-
[[Category: Rejzek, M]]
+
[[Category: Naldrett MJ]]
-
[[Category: Smith, A M]]
+
[[Category: Rejzek M]]
-
[[Category: Southard, A M]]
+
[[Category: Smith AM]]
-
[[Category: Stanley, D]]
+
[[Category: Southard AM]]
-
[[Category: Stevenson, C E.M]]
+
[[Category: Stanley D]]
-
[[Category: Carbohydrate metabolism]]
+
[[Category: Stevenson CEM]]
-
[[Category: Germination]]
+
-
[[Category: Glycosidase]]
+
-
[[Category: Glycosyl hydrolase family 14]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Starch degradation]]
+

Current revision

Crystal structure of Barley Beta-Amylase complexed with 3,4- epoxybutyl alpha-D-glucopyranoside

PDB ID 2xgi

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools