This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
3dex
From Proteopedia
(Difference between revisions)
| (2 intermediate revisions not shown.) | |||
| Line 1: | Line 1: | ||
==Crystal structure of SAV_2001 protein from Streptomyces avermitilis, Northeast Structural Genomics Consortium Target SvR107.== | ==Crystal structure of SAV_2001 protein from Streptomyces avermitilis, Northeast Structural Genomics Consortium Target SvR107.== | ||
| - | <StructureSection load='3dex' size='340' side='right' caption='[[3dex]], [[Resolution|resolution]] 2.70Å' scene=''> | + | <StructureSection load='3dex' size='340' side='right'caption='[[3dex]], [[Resolution|resolution]] 2.70Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[3dex]] is a 8 chain structure with sequence from [ | + | <table><tr><td colspan='2'>[[3dex]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_avermitilis Streptomyces avermitilis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3DEX OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3DEX FirstGlance]. <br> |
| - | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.7Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[ | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3dex FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3dex OCA], [https://pdbe.org/3dex PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3dex RCSB], [https://www.ebi.ac.uk/pdbsum/3dex PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3dex ProSAT], [https://www.topsan.org/Proteins/NESGC/3dex TOPSAN]</span></td></tr> |
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q82LK9_STRAW Q82LK9_STRAW] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Check<jmol> | Check<jmol> | ||
<jmolCheckbox> | <jmolCheckbox> | ||
| - | <scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dex_consurf.spt"</scriptWhenChecked> | + | <scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/de/3dex_consurf.spt"</scriptWhenChecked> |
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | <scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked> | ||
<text>to colour the structure by Evolutionary Conservation</text> | <text>to colour the structure by Evolutionary Conservation</text> | ||
| Line 19: | Line 21: | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Streptomyces avermitilis | + | [[Category: Large Structures]] |
| - | [[Category: Acton | + | [[Category: Streptomyces avermitilis]] |
| - | [[Category: Chen | + | [[Category: Acton TB]] |
| - | [[Category: Cunningham | + | [[Category: Chen CX]] |
| - | [[Category: Fang | + | [[Category: Cunningham K]] |
| - | [[Category: Forouhar | + | [[Category: Fang Y]] |
| - | [[Category: Hunt | + | [[Category: Forouhar F]] |
| - | [[Category: Janjua | + | [[Category: Hunt JF]] |
| - | [[Category: Ma | + | [[Category: Janjua H]] |
| - | [[Category: Montelione | + | [[Category: Ma L-C]] |
| - | + | [[Category: Montelione GT]] | |
| - | [[Category: Neely | + | [[Category: Neely H]] |
| - | [[Category: Owen | + | [[Category: Owen LA]] |
| - | [[Category: Seetharaman | + | [[Category: Seetharaman J]] |
| - | [[Category: Tong | + | [[Category: Tong L]] |
| - | [[Category: Xiao | + | [[Category: Xiao R]] |
| - | + | ||
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
Crystal structure of SAV_2001 protein from Streptomyces avermitilis, Northeast Structural Genomics Consortium Target SvR107.
| |||||||||||
Categories: Large Structures | Streptomyces avermitilis | Acton TB | Chen CX | Cunningham K | Fang Y | Forouhar F | Hunt JF | Janjua H | Ma L-C | Montelione GT | Neely H | Owen LA | Seetharaman J | Tong L | Xiao R

