3a7k

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (08:10, 23 October 2024) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of halorhodopsin from Natronomonas pharaonis==
==Crystal structure of halorhodopsin from Natronomonas pharaonis==
-
<StructureSection load='3a7k' size='340' side='right' caption='[[3a7k]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
+
<StructureSection load='3a7k' size='340' side='right'caption='[[3a7k]], [[Resolution|resolution]] 2.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3a7k]] is a 3 chain structure with sequence from [http://en.wikipedia.org/wiki/Natronomonas_pharaonis_dsm_2160 Natronomonas pharaonis dsm 2160]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A7K OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3A7K FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3a7k]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Natronomonas_pharaonis_DSM_2160 Natronomonas pharaonis DSM 2160]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3A7K OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3A7K FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=L1P:3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL'>L1P</scene>, <scene name='pdbligand=L2P:2,3-DI-PHYTANYL-GLYCEROL'>L2P</scene>, <scene name='pdbligand=L3P:2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3-SN-GLYCEROL-1-PHOSPHATE'>L3P</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3a4b|3a4b]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=22B:BACTERIORUBERIN'>22B</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=L1P:3-PHOSPHORYL-[1,2-DI-PHYTANYL]GLYCEROL'>L1P</scene>, <scene name='pdbligand=L2P:2,3-DI-PHYTANYL-GLYCEROL'>L2P</scene>, <scene name='pdbligand=L3P:2,3-DI-O-PHYTANLY-3-SN-GLYCERO-1-PHOSPHORYL-3-SN-GLYCEROL-1-PHOSPHATE'>L3P</scene>, <scene name='pdbligand=RET:RETINAL'>RET</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3a7k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a7k OCA], [http://pdbe.org/3a7k PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3a7k RCSB], [http://www.ebi.ac.uk/pdbsum/3a7k PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3a7k ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3a7k FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3a7k OCA], [https://pdbe.org/3a7k PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3a7k RCSB], [https://www.ebi.ac.uk/pdbsum/3a7k PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3a7k ProSAT]</span></td></tr>
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 12: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a7/3a7k_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/a7/3a7k_consurf.spt"</scriptWhenChecked>
-
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
+
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview03.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
</jmolCheckbox>
</jmolCheckbox>
Line 29: Line 29:
==See Also==
==See Also==
-
*[[Bacteriorhodopsin|Bacteriorhodopsin]]
+
*[[Bacteriorhodopsin 3D structures|Bacteriorhodopsin 3D structures]]
-
*[[Rhodopsin|Rhodopsin]]
+
*[[Rhodopsin 3D structures|Rhodopsin 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Natronomonas pharaonis dsm 2160]]
+
[[Category: Large Structures]]
-
[[Category: Kouyama, T]]
+
[[Category: Natronomonas pharaonis DSM 2160]]
-
[[Category: Light-driven chloride ion pump]]
+
[[Category: Kouyama T]]
-
[[Category: Membrane protein]]
+
-
[[Category: Retinal protein]]
+
-
[[Category: Trimeric bacterioruberin-protein complex]]
+

Current revision

Crystal structure of halorhodopsin from Natronomonas pharaonis

PDB ID 3a7k

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3a7k"
Personal tools