This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


2w9d

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (15:48, 13 December 2023) (edit) (undo)
 
(3 intermediate revisions not shown.)
Line 1: Line 1:
-
==STRUCTURE OF FAB FRAGMENT OF THE ICSM 18 - ANTI-PRP THERAPEUTIC ANTIBODY AT 1.57 A RESOLUTION.==
+
==Structure of Fab fragment of the ICSM 18 - anti-Prp therapeutic antibody at 1.57 A resolution.==
-
<StructureSection load='2w9d' size='340' side='right' caption='[[2w9d]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
+
<StructureSection load='2w9d' size='340' side='right'caption='[[2w9d]], [[Resolution|resolution]] 1.57&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[2w9d]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W9D OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2W9D FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[2w9d]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2W9D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2W9D FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.57&#8491;</td></tr>
-
<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene>, <scene name='pdbligand=PCA:PYROGLUTAMIC+ACID'>PCA</scene></td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2w9e|2w9e]]</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2w9d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w9d OCA], [https://pdbe.org/2w9d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2w9d RCSB], [https://www.ebi.ac.uk/pdbsum/2w9d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2w9d ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=2w9d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2w9d OCA], [http://pdbe.org/2w9d PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=2w9d RCSB], [http://www.ebi.ac.uk/pdbsum/2w9d PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=2w9d ProSAT]</span></td></tr>
+
</table>
</table>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
Line 13: Line 12:
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w9/2w9d_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/w9/2w9d_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 30: Line 29:
==See Also==
==See Also==
-
*[[3D structures of antibody|3D structures of antibody]]
+
*[[Antibody 3D structures|Antibody 3D structures]]
 +
*[[Sandbox 20009|Sandbox 20009]]
 +
*[[3D structures of non-human antibody|3D structures of non-human antibody]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
 +
[[Category: Large Structures]]
[[Category: Mus musculus]]
[[Category: Mus musculus]]
-
[[Category: Antonyuk, S V]]
+
[[Category: Antonyuk SV]]
-
[[Category: Batchelor, M]]
+
[[Category: Batchelor M]]
-
[[Category: Clarke, A R]]
+
[[Category: Clarke AR]]
-
[[Category: Collinge, J]]
+
[[Category: Collinge J]]
-
[[Category: Cooper, S]]
+
[[Category: Cooper S]]
-
[[Category: Fraser, C]]
+
[[Category: Fraser C]]
-
[[Category: Georgiou, T]]
+
[[Category: Georgiou T]]
-
[[Category: Hasnain, S S]]
+
[[Category: Hasnain SS]]
-
[[Category: Jackson, G S]]
+
[[Category: Jackson GS]]
-
[[Category: Jones, S]]
+
[[Category: Jones S]]
-
[[Category: Khalili-Shirazi, A]]
+
[[Category: Khalili-Shirazi A]]
-
[[Category: Sangar, D]]
+
[[Category: Sangar D]]
-
[[Category: Strange, R W]]
+
[[Category: Strange RW]]
-
[[Category: Trevitt, C R]]
+
[[Category: Trevitt CR]]
-
[[Category: Fab]]
+
-
[[Category: Immune system]]
+
-
[[Category: Prion]]
+
-
[[Category: Prp]]
+

Current revision

Structure of Fab fragment of the ICSM 18 - anti-Prp therapeutic antibody at 1.57 A resolution.

PDB ID 2w9d

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools