This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3aar

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (14:17, 1 November 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of Lp1NTPDase from Legionella pneumophila in complex with AMPPNP==
==Crystal structure of Lp1NTPDase from Legionella pneumophila in complex with AMPPNP==
-
<StructureSection load='3aar' size='340' side='right' caption='[[3aar]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
+
<StructureSection load='3aar' size='340' side='right'caption='[[3aar]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3aar]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Legph Legph]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AAR OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3AAR FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3aar]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Legionella_pneumophila_subsp._pneumophila_str._Philadelphia_1 Legionella pneumophila subsp. pneumophila str. Philadelphia 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AAR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AAR FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[3aap|3aap]], [[3aaq|3aaq]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ANP:PHOSPHOAMINOPHOSPHONIC+ACID-ADENYLATE+ESTER'>ANP</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">lpg1905 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=272624 LEGPH])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3aar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aar OCA], [https://pdbe.org/3aar PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3aar RCSB], [https://www.ebi.ac.uk/pdbsum/3aar PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3aar ProSAT]</span></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3aar FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3aar OCA], [http://pdbe.org/3aar PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3aar RCSB], [http://www.ebi.ac.uk/pdbsum/3aar PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3aar ProSAT]</span></td></tr>
+
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5ZUA2_LEGPH Q5ZUA2_LEGPH]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aa/3aar_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/aa/3aar_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 35: Line 36:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Legph]]
+
[[Category: Large Structures]]
-
[[Category: Beddoe, T]]
+
[[Category: Legionella pneumophila subsp. pneumophila str. Philadelphia 1]]
-
[[Category: Ge, H]]
+
[[Category: Beddoe T]]
-
[[Category: Rossjohn, J]]
+
[[Category: Ge H]]
-
[[Category: Vivian, J P]]
+
[[Category: Rossjohn J]]
-
[[Category: Adenosine triphosphatase]]
+
[[Category: Vivian JP]]
-
[[Category: Hydrolase]]
+
-
[[Category: Ntpdase]]
+

Current revision

Crystal structure of Lp1NTPDase from Legionella pneumophila in complex with AMPPNP

PDB ID 3aar

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools