This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


4b2o

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (11:41, 20 December 2023) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of Bacillus subtilis YmdB, a global regulator of late adaptive responses.==
==Crystal structure of Bacillus subtilis YmdB, a global regulator of late adaptive responses.==
-
<StructureSection load='4b2o' size='340' side='right' caption='[[4b2o]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
+
<StructureSection load='4b2o' size='340' side='right'caption='[[4b2o]], [[Resolution|resolution]] 1.64&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[4b2o]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacsu Bacsu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B2O OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4B2O FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[4b2o]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4B2O OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4B2O FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.64&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=4b2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b2o OCA], [http://pdbe.org/4b2o PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=4b2o RCSB], [http://www.ebi.ac.uk/pdbsum/4b2o PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=4b2o ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FE2:FE+(II)+ION'>FE2</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4b2o FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4b2o OCA], [https://pdbe.org/4b2o PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4b2o RCSB], [https://www.ebi.ac.uk/pdbsum/4b2o PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4b2o ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/YMDB_BACSU YMDB_BACSU]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 18: Line 21:
==See Also==
==See Also==
-
*[[Phosphodiesterase|Phosphodiesterase]]
+
*[[Phosphodiesterase 3D structures|Phosphodiesterase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Bacsu]]
+
[[Category: Bacillus subtilis subsp. subtilis str. 168]]
-
[[Category: Diethmaier, C]]
+
[[Category: Large Structures]]
-
[[Category: Kovacs, A T]]
+
[[Category: Diethmaier C]]
-
[[Category: Kuipers, O P]]
+
[[Category: Kovacs AT]]
-
[[Category: Lewis, R J]]
+
[[Category: Kuipers OP]]
-
[[Category: Newman, J A]]
+
[[Category: Lewis RJ]]
-
[[Category: Rodrigues, C]]
+
[[Category: Newman JA]]
-
[[Category: Stulke, J]]
+
[[Category: Rodrigues C]]
-
[[Category: Biofilm]]
+
[[Category: Stulke J]]
-
[[Category: Hydrolase]]
+
-
[[Category: Metalloprotein]]
+
-
[[Category: Phosphodiesterase]]
+
-
[[Category: Sporulation]]
+

Current revision

Crystal structure of Bacillus subtilis YmdB, a global regulator of late adaptive responses.

PDB ID 4b2o

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools