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| | ==Crystal structure of glycosyltrehalose trehalohydrolase (E283Q) complexed with maltoheptaose== | | ==Crystal structure of glycosyltrehalose trehalohydrolase (E283Q) complexed with maltoheptaose== |
| - | <StructureSection load='3vgg' size='340' side='right' caption='[[3vgg]], [[Resolution|resolution]] 2.66Å' scene=''> | + | <StructureSection load='3vgg' size='340' side='right'caption='[[3vgg]], [[Resolution|resolution]] 2.66Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3vgg]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_35091 Atcc 35091]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VGG OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3VGG FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3vgg]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharolobus_solfataricus Saccharolobus solfataricus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3VGG OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3VGG FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.66Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[1eh9|1eh9]], [[3vgc|3vgc]], [[3vgd|3vgd]], [[3vge|3vge]], [[3vgf|3vgf]], [[3vgh|3vgh]]</td></tr>
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FLC:CITRATE+ANION'>FLC</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">treZ ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2287 ATCC 35091])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3vgg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vgg OCA], [https://pdbe.org/3vgg PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3vgg RCSB], [https://www.ebi.ac.uk/pdbsum/3vgg PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3vgg ProSAT]</span></td></tr> |
| - | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/4-alpha-D-((1->4)-alpha-D-glucano)trehalose_trehalohydrolase 4-alpha-D-((1->4)-alpha-D-glucano)trehalose trehalohydrolase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.1.141 3.2.1.141] </span></td></tr>
| + | |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3vgg FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3vgg OCA], [http://pdbe.org/3vgg PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3vgg RCSB], [http://www.ebi.ac.uk/pdbsum/3vgg PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3vgg ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/TREZ_SACSO TREZ_SACSO] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Atcc 35091]] | + | [[Category: Large Structures]] |
| - | [[Category: Feese, M D]] | + | [[Category: Saccharolobus solfataricus]] |
| - | [[Category: Kato, M]] | + | [[Category: Feese MD]] |
| - | [[Category: Kobayashi, K]] | + | [[Category: Kato M]] |
| - | [[Category: Komeda, T]] | + | [[Category: Kobayashi K]] |
| - | [[Category: Kondo, K]] | + | [[Category: Komeda T]] |
| - | [[Category: Kuroki, R]] | + | [[Category: Kondo K]] |
| - | [[Category: Miura, Y]] | + | [[Category: Kuroki R]] |
| - | [[Category: Okazaki, N]] | + | [[Category: Miura Y]] |
| - | [[Category: Tamada, T]] | + | [[Category: Okazaki N]] |
| - | [[Category: Alpha-amylase]]
| + | [[Category: Tamada T]] |
| - | [[Category: Alpha/beta barrel]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Trehalohydrolase]]
| + | |
| - | [[Category: Trehalose]]
| + | |
| Structural highlights
Function
TREZ_SACSO
Publication Abstract from PubMed
Glycosyltrehalose trehalohydrolase (GTHase) is an alpha-amylase that cleaves the alpha-1,4 bond adjacent to the alpha-1,1 bond of maltooligosyltrehalose to release trehalose. To investigate the catalytic and substrate recognition mechanisms of GTHase, two residues, Asp252 (nucleophile) and Glu283 (general acid/base), located at the catalytic site of GTHase were mutated (Asp252-->Ser (D252S), Glu (D252E) and Glu283-->Gln (E283Q)), and the activity and structure of the enzyme were investigated. The E283Q, D252E, and D252S mutants showed only 0.04, 0.03, and 0.6% of enzymatic activity against the wild-type, respectively. The crystal structure of the E283Q mutant GTHase in complex with the substrate, maltotriosyltrehalose (G3-Tre), was determined to 2.6-A resolution. The structure with G3-Tre indicated that GTHase has at least five substrate binding subsites and that Glu283 is the catalytic acid, and Asp252 is the nucleophile that attacks the C1 carbon in the glycosidic linkage of G3-Tre. The complex structure also revealed a scheme for substrate recognition by GTHase. Substrate recognition involves two unique interactions: stacking of Tyr325 with the terminal glucose ring of the trehalose moiety and perpendicularly placement of Trp215 to the pyranose rings at the subsites -1 and +1 glucose.
Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1.,Okazaki N, Tamada T, Feese MD, Kato M, Miura Y, Komeda T, Kobayashi K, Kondo K, Blaber M, Kuroki R Protein Sci. 2012 Apr;21(4):539-52. doi: 10.1002/pro.2039. Epub 2012 Feb 28. PMID:22334583[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Okazaki N, Tamada T, Feese MD, Kato M, Miura Y, Komeda T, Kobayashi K, Kondo K, Blaber M, Kuroki R. Substrate recognition mechanism of a glycosyltrehalose trehalohydrolase from Sulfolobus solfataricus KM1. Protein Sci. 2012 Apr;21(4):539-52. doi: 10.1002/pro.2039. Epub 2012 Feb 28. PMID:22334583 doi:10.1002/pro.2039
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