This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


3hmu

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (10:00, 21 February 2024) (edit) (undo)
 
(2 intermediate revisions not shown.)
Line 1: Line 1:
==Crystal structure of a class III aminotransferase from Silicibacter pomeroyi==
==Crystal structure of a class III aminotransferase from Silicibacter pomeroyi==
-
<StructureSection load='3hmu' size='340' side='right' caption='[[3hmu]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
+
<StructureSection load='3hmu' size='340' side='right'caption='[[3hmu]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[3hmu]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Atcc_700808 Atcc 700808]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HMU OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3HMU FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[3hmu]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Ruegeria_pomeroyi Ruegeria pomeroyi]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3HMU OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3HMU FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SPO3471 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=89184 ATCC 700808])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=3hmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hmu OCA], [http://pdbe.org/3hmu PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=3hmu RCSB], [http://www.ebi.ac.uk/pdbsum/3hmu PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=3hmu ProSAT], [http://www.topsan.org/Proteins/NYSGXRC/3hmu TOPSAN]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3hmu FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3hmu OCA], [https://pdbe.org/3hmu PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3hmu RCSB], [https://www.ebi.ac.uk/pdbsum/3hmu PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3hmu ProSAT], [https://www.topsan.org/Proteins/NYSGXRC/3hmu TOPSAN]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/Q5LMU1_RUEPO Q5LMU1_RUEPO]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Check<jmol>
Check<jmol>
<jmolCheckbox>
<jmolCheckbox>
-
<scriptWhenChecked>select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hm/3hmu_consurf.spt"</scriptWhenChecked>
+
<scriptWhenChecked>; select protein; define ~consurf_to_do selected; consurf_initial_scene = true; script "/wiki/ConSurf/hm/3hmu_consurf.spt"</scriptWhenChecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<scriptWhenUnchecked>script /wiki/extensions/Proteopedia/spt/initialview01.spt</scriptWhenUnchecked>
<text>to colour the structure by Evolutionary Conservation</text>
<text>to colour the structure by Evolutionary Conservation</text>
Line 20: Line 22:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Atcc 700808]]
+
[[Category: Large Structures]]
-
[[Category: Almo, S C]]
+
[[Category: Ruegeria pomeroyi]]
-
[[Category: Bain, K T]]
+
[[Category: Almo SC]]
-
[[Category: Bonanno, J B]]
+
[[Category: Bain KT]]
-
[[Category: Burley, S K]]
+
[[Category: Bonanno JB]]
-
[[Category: Freeman, J]]
+
[[Category: Burley SK]]
-
[[Category: Miller, S]]
+
[[Category: Freeman J]]
-
[[Category: Structural genomic]]
+
[[Category: Miller S]]
-
[[Category: Ramagopal, U]]
+
[[Category: Ramagopal U]]
-
[[Category: Sauder, J M]]
+
[[Category: Sauder JM]]
-
[[Category: Toro, R]]
+
[[Category: Toro R]]
-
[[Category: Aminotransferase]]
+
-
[[Category: NYSGXRC, New York SGX Research Center for Structural Genomics]]
+
-
[[Category: PSI, Protein structure initiative]]
+
-
[[Category: Pyridoxal phosphate]]
+
-
[[Category: Transferase]]
+

Current revision

Crystal structure of a class III aminotransferase from Silicibacter pomeroyi

PDB ID 3hmu

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools